Contig 000564:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS006D09Sequence589000564 (2)ref|XP_006356562.1|9e-21PREDICTED: putative late blight resistance protein homolog R1A-3-like [Solanum
JMSF003H17Sequence378000564 (2)804017061emb|CDP11642.1|3e-16unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS006D09+                                             GCAATCATATTCTTGAGAAACAGTAC
                      ____________________________________________________________
consensus                                               GCAATCATATTCTTGAGAAACAGTAC
 
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JMFS006D09+           ACCACACACGCATGTCAAAGTGGTTGACTACATTTTTCTCCTCATACACTCTCCTCGCTA
                      ____________________________________________________________
consensus             ACCACACACGCATGTCAAAGTGGTTGACTACATTTTTCTCCTCATACACTCTCCTCGCTA
 
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JMFS006D09+           AAGTTGTCTTTCCCAATCCGCCCATGCCACTAATTAAAACAACTTCTCTCTCCTGTGACC
                      ____________________________________________________________
consensus             AAGTTGTCTTTCCCAATCCGCCCATGCCACTAATTAAAACAACTTCTCTCTCCTGTGACC
 
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JMFS006D09+           CATGAATAAGCTGATCTATGATTATTTCTTCTTCCTTCTTGAAACCCACAACTATATCAT
                      ____________________________________________________________
consensus             CATGAATAAGCTGATCTATGATTATTTCTTCTTCCTTCTTGAAACCCACAACTATATCAT
 
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JMFS006D09+           TATCTGGATTAGAGATGTTTGGCATCTTTTCGATCTCGAAAAGCTTGTATTATATTATGT
JMSF003H17+                                                     GCTTGTATTATATTATGT
                      ____________________________________________________________
consensus             TATCTGGATTAGAGATGTTTGGCATCTTTTCGATCTCGAAAAGCTTGTATTATATTATGT
 
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JMFS006D09+           CATTGTAGTGTGTGTATATTTAGGGATCTCCAGATGAACACTTTGAGTTGATTGAAAGAA
JMSF003H17+           CTTTGTAGTGTGTGTATATTTAGGGATCTCCAGATGAACACTTTGAGTTGATTGAAAGAA
                      ____________________________________________________________
consensus             CTTTGTAGTGTGTGTATATTTAGGGATCTCCAGATGAACACTTTGAGTTGATTGAAAGAA
 
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JMFS006D09+           CTAACACTGTGAAAGATTATAGTTTGCCTCAGCTCTGATATGATTGATCTGTAAGTGATG
JMSF003H17+           CTAACACTGTGAAAGATTATAGTTTGCCTCAGCTCTGATATGATTGATCTGTAAGTGATG
                      ____________________________________________________________
consensus             CTAACACTGTGAAAGATTATAGTTTGCCTCAGCTCTGATATGATTGATCTGTAAGTGATG
 
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JMFS006D09+           GGGAGAGAAATGAATTTCAGAGAGACTATCCAATATCTTTAAGAACAATAGCTGCAGATT
JMSF003H17+           GGGAGAGAAATGAATTTCAGAGAGACTATCCAATATCTTTAAGAACAATAGCTGCAGATT
                      ____________________________________________________________
consensus             GGGAGAGAAATGAATTTCAGAGAGACTATCCAATATCTTTAAGAACAATAGCTGCAGATT
 
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JMFS006D09+           --------CCTTAAATCTCAAGATGAACACTTTGTTCGAGTTGATTGAAAGAAGTAACTT
JMSF003H17+           CCAACTAACCTTAAATCTCAAGATGAACACTTTGTTCGAGTTGATTGAAAGAAGTAACTT
                      ____________________________________________________________
consensus             CCAACTAACCTTAAATCTCAAGATGAACACTTTGTTCGAGTTGATTGAAAGAAGTAACTT
 
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JMFS006D09+           GTCAAAGATTACAATTTGCCTCTGATCTGATGAT                          
JMSF003H17+           GTCAAAGATTACAATTTGCCTCTGATCTGATGATGACTGGCAGAGAAATGAATCTCAGAG
                      ____________________________________________________________
consensus             GTCAAAGATTACAATTTGCCTCTGATCTGATGATGACTGGCAGAGAAATGAATCTCAGAG
 
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JMSF003H17+           AAGAGAGAGCATTTGGTAGAAGCTAGAAGTGATTTATATGAAAAGAGATGGGTAGTGATC
                      ____________________________________________________________
consensus             AAGAGAGAGCATTTGGTAGAAGCTAGAAGTGATTTATATGAAAAGAGATGGGTAGTGATC