| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001C04 | Sequence | 368 | 020559 | ref|XP_009772022.1| | 6e-35 | PREDICTED: protein SRG1-like [Nicotiana sylvestris] | 381 | 000563 (13) | ref|XP_009772022.1| | 2e-24 | PREDICTED: protein SRG1-like [Nicotiana sylvestris] |
| JMFN033B21 | Sequence | 617 | 000563 (13) | ref|XP_009772022.1| | 7e-84 | PREDICTED: protein SRG1-like [Nicotiana sylvestris] | |||||
| JMFS147F01 | Sequence | 634 | 000563 (13) | ref|XP_009772022.1| | 2e-84 | PREDICTED: protein SRG1-like [Nicotiana sylvestris] | |||||
| JMSF003G01 | Sequence | 379 | 000563 (13) | ref|XP_007022033.1| | 2e-36 | Senescence-related gene 1 [Theobroma cacao] gb|EOY13558.1| Senescence-related ge | 689 | 000563 (13) | ref|XP_006355578.1| | 7e-75 | PREDICTED: protein SRG1-like [Solanum tuberosum] |
| JMSF046B15 | Sequence | 745 | 000563 (13) | ref|XP_002269087.1| | 2e-103 | PREDICTED: protein SRG1 [Vitis vinifera] emb|CBI30797.3| unnamed protein product | 653 | 000563 (13) | ref|XP_004233003.1| | 1e-65 | PREDICTED: protein SRG1-like [Solanum lycopersicum] |
| JMSF046E01 | Sequence | 251 | 000563 (13) | 207 | 000563 (13) | ||||||
| JMSF046P12 | Sequence | 685 | 000563 (13) | ref|XP_002269087.1| | 5e-90 | PREDICTED: protein SRG1 [Vitis vinifera] emb|CBI30797.3| unnamed protein product | 507 | 000563 (13) | ref|XP_009772022.1| | 2e-34 | PREDICTED: protein SRG1-like [Nicotiana sylvestris] |
| JMSF052A11 | Sequence | 653 | 000563 (13) | ref|XP_002269087.1| | 8e-83 | PREDICTED: protein SRG1 [Vitis vinifera] emb|CBI30797.3| unnamed protein product | 944 | 000563 (13) | ref|XP_009772022.1| | 1e-114 | PREDICTED: protein SRG1-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF046E01+ TTTTTTTTTTAAATGTAAAATTATTACATAGAAGATT
rJMSF003G01- ATT
rJMSF046P12- ATT
rJMSF052A11- ATT
____________________________________________________________
consensus TTTTTTTTTTAAATGTAAAATTATTACATAGAAGATT
. : . : . : . : . : . :
rJMSF046E01- GATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
JMSF046E01+ GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
rJMSF003G01- GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
rJMSF046P12- GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
rJMSF052A11- GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
____________________________________________________________
consensus GGAATAAGATGGATGATTTTAAAAACTATTACAAGGCCCTATTTATACAAAATATAGGAA
. : . : . : . : . : . :
rJMSF046E01- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
JMSF046E01+ ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
rJMSF003G01- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
rJMSF046P12- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
rJMSF052A11- ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
____________________________________________________________
consensus ATAACAAATATATTACATAGGAGGATGAGAGGTAAATACAAAATTATAGGAATTAGGAAA
. : . : . : . : . : . :
rJMSF046E01- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
JMSF046E01+ TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
rJMSF003G01- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
rJMSF046P12- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
rJMSF052A11- TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
____________________________________________________________
consensus TCATGAGATTAGCATGCATACGTGGAAGTTGAAAAGTGAAATAGTCTGAAGAATCTGGAC
. : . : . : . : . : . :
rJMSF046E01- CACATATTTTATTCTAACACGCTCCACTAACAGC
JMSF046E01+ CACATATTTTATTCTAACACGCTCCACTAACAGC
rJMSF003G01- CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
rJMSF046P12- CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
rJMFF001C04- AACAGATTGAGGACATTCTTCCGTTTGGATCC
rJMSF046B15- AACAGATTGAGGACATTCTTCCGTTTGGATCC
rJMSF052A11- CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
____________________________________________________________
consensus CACATATTTTATTCTAACACGCTCCACTAACAGCTTGAGGACATTCTTCTATTTGGATCC
. : . : . : . : . : . :
rJMSF003G01- TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
rJMSF046P12- TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
rJMFF001C04- TCATAACATCTATATAAGATTTACTATCCAGCTTTCGACCAAAGAAGCCTCTGAAATAAT
rJMSF046B15- TCATAACATCTCTATAANATTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
rJMSF052A11- TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
____________________________________________________________
consensus TCATAACATCTATATAAGACTTACTATCCAGCTTTCGACTATAGAATCCTCTGTAATAAT
. : . : . : . : . : . :
rJMSF003G01- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
rJMSF046P12- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
rJMFF001C04- CTGCGACTCCCACTTTCCTGAACTTGGCTGGATTTTGAGGGGTGATCAAACTTGGAGCAG
rJMSF046B15- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
rJMSF052A11- CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
____________________________________________________________
consensus CTGCAACTCCCACGTTCCTGAACTTGGCTGGATTTTGAGGGTTGATCAAACTTGGAACAG
. : . : . : . : . : . :
rJMSF003G01- GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
rJMSF046P12- GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
rJMFF001C04- GACCCAATTCTGCGTCAAGTCTGGGGCTCAAAAATGTTGCAACANACAGCCTTTCCTTTT
rJMSF046B15- GACCCAATTCTGCCTCAAGTCTGGGGCTCANAAATGTCCCAACCGAAAGCCTTTCCTTTT
rJMSF052A11- GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
____________________________________________________________
consensus GACCCAATTCTGCCTCAAGTCTGGGGCTCAGAAATGTCCCAACCGAAAGCCTTTCCTTTT
. : . : . : . : . : . :
rJMSF003G01- CCGAGTTTAGTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
rJMSF046P12- CCGAGTTTACTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
rJMFF001C04- CNGANTTTACTACTG
rJMSF046B15- CCGAGTTTACTACNGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
rJMSF052A11- CCGAGTTTACTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
____________________________________________________________
consensus CCGAGTTTACTACTGCTCGATGCTCAACACTTTTGTAAATTCCATTTGTCAGTATCTCTA
. : . : . : . : . : . :
rJMSF003G01- GAATATCCCCGATGTTGATGACGAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
rJMSF046P12- GAATATCCCC
rJMSF046B15- GAATATCCCCNATGTTGATGACNAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
rJMSF052A11- GAATATCCCCGATGTTGATGACGAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
____________________________________________________________
consensus GAATATCCCCGATGTTGATGACGAAGGCGCCATGGATGGGTTTAACAGGAATCCACATGC
. : . : . : . : . : . :
rJMSF003G01- CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGAAGGATTGTAAGCCCGA
rJMSF046B15- CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGCAGGATTGTAAGCCCGA
rJMSF052A11- CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGAAGGATTGTAAGCCCGA
JMSF046B15+ GAGTTGGAGCAGGATTGTAAGCCCGA
____________________________________________________________
consensus CTTCTTTCTTGATCTGGAGGCCTTCCATTTCATTGAGTTGGAGCAGGATTGTAAGCCCGA
. : . : . : . : . : . :
rJMSF003G01- CAGCATCTGAGTGAGGATAAAGTCCTATGACTTTGTCGGGTTGGGGACAACGCGGATATT
rJMSF046B15- CAGCATCTGAGTGAGGATAAAGTCCTATGACATTGTCGGGTTGGGGACA
rJMSF052A11- CAGCATCTGAGTGAGGATAAAGTCCTATGACTTTGTCGGGTTGGGGACAACGCGGATATT
JMFN033B21+ CGCGGATATG
JMFS147F01+ GGTTGGGGACAACGAGGATAGT
JMSF046B15+ CAGCATNTGAGTGAGGATAAAGTCCTATGACATTGTCGGGTTGGGGACAACGCGGATATT
JMSF046P12+ GTCGGGTTGGGGACAACGCGGATATT
____________________________________________________________
consensus CAGCATCTGAGTGAGGATAAAGTCCTATGACATTGTCGGGTTGGGGACAACGCGGATATT
. : . : . : . : . : . :
rJMSF003G01- GATTCATCCTCATAGACTGCATCC
rJMSF052A11- GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
JMFN033B21+ NATTCATCCTCATAGACTGCATCCCATCCTCGAACAATCCTCGTACATGTTCTTGCTCAA
JMFS147F01+ GATTCATCCGCATAGCATGCATCCCTTCCTTGAATAATCCTCGTACATGTTCCAGCTCAA
JMSF046B15+ GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATCAA
JMSF052A11+ TCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
JMSF046P12+ GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
____________________________________________________________
consensus GATTCATCCTCATAGACTGCATCCCTTCCTCGAACAATCCTCGTACATGTTCCTGATTAA
. : . : . : . : . : . :
rJMSF052A11- TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
JMFN033B21+ TCCCCAGAGCTTTTCCTAAGTAATCAATGATTGTGAGGGCGAGATTTCTCAGTTCCTCTG
JMFS147F01+ TTCCCAGAGCTTTTGCTAAATATTCAATGATTTTCATGGCCAAATTTCTCAATTCCTCTG
JMSF046B15+ TCCCCAGAGCTTTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
JMSF052A11+ TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
JMSF046P12+ TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGTCCAGATTTCTCAGTTCCTCTG
____________________________________________________________
consensus TCCCCAGAGCTCTTGCTAAGTAATCAATGATTGTTAGGGCCAGATTTCTCAGTTCCTCTG
. : . : . : . : . : . :
rJMSF052A11- CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
JMFN033B21+ CAAACATTTCCATTGTTTCTCTGAATGGCAAAGGAATATTTGGGAATAGATTTGGTTTCC
JMFS147F01+ CATACATTTCTACTGTTTCTCTGAACGGCAAAGGGAGATTTGGGAATAAATCTGATTTCC
JMSF046B15+ CATATATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
JMSF052A11+ CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
JMSF046P12+ CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
____________________________________________________________
consensus CATACATTTCCATTGTTTCTCTGAATGGCAAAGGGATATTTGGGAATAGATTTGGTTTCC
. : . : . : . : . : . :
rJMSF052A11- TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMFN033B21+ TCAAGTAAGTTGGGGAAGTGATAATATAGAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMFS147F01+ TTAAATAAGTTGGGAGAGTCATAATATAAAACATATCAGACCAGTCAAGTTTTTGCTCCT
JMSF046B15+ TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMSF052A11+ TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
JMSF046P12+ TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
____________________________________________________________
consensus TCAAGTAAGTTGGGGAAGTGATGATATAAAACATGTCACACCAGTCAAGTTTTTGCTCAT
. : . : . : . : . : . :
rJMSF052A11- CAGAATGCACAAAAGCTGGTCCGAAGCCNTGAAGAT
JMFN033B21+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCTCCTGCCTCTTGCCAAAACTTCT
JMFS147F01+ CAGAAATTACAAAAGCATGTCCAAAGCCTTGAAGATCTCCGGGCTCTTGCCAAAGCTTCT
JMSF046B15+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCAGCCTCTTGCCAAAACTTCT
JMSF052A11+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCTGCCTCTTGCCAAAACTTCT
JMSF046P12+ CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCTGCCTCTTGCCAAAACTTCT
JMSF003G01+ AAAACTTCT
____________________________________________________________
consensus CAGAATGCACAAAAGCTTGTCCGAAGCCTTGAAGATCCCCTGCCTCTTGCCAAAACTTCT
. : . : . : . : . : . :
JMFN033B21+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMFS147F01+ TCTTCTCTTCCATGGGGAGATGGAAGAAATCTTTTGTGTCAGCTTTCACCTTTTCAACCA
JMSF046B15+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMSF052A11+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMSF046P12+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
JMSF003G01+ TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
____________________________________________________________
consensus TCTTCTCTTCCATTGGGAGATTGAGGAAATCTTTTGTATCAGTTTTCACTTTTTCAATCA
. : . : . : . : . : . :
JMFN033B21+ ATGAAGAACTCACTCCATGGCTTATTAGCTGAAAAAACCCCCATTCTTTGCACGCAATAT
JMFS147F01+ ATGAAGAACTCACTCCGTGGTTTATTAGCTGAAAAAAACCCCATTCTTTGCTTGCAACAT
JMSF046B15+ ATGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAACCCCCATTCTTTGCATGCAAAAT
JMSF052A11+ GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
JMSF046P12+ GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
JMSF003G01+ GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
____________________________________________________________
consensus GTGAAGAACTCACTCCATGGTTTATTAGCTGAAAAAATCCCCATTCTTTGCATGCAAAAT
. : . : . : . : . : . :
JMFN033B21+ CCAGCTTCTTCAGC---TCCTCGGAGTCTCCTTGAAGCAAGTTTGACATGTTGATCACCG
JMFS147F01+ CCATCTTCTTCAGCTC
JMSF046B15+ CCAGCTTCTTCAGCTCATCATCGCATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
JMSF052A11+ CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
JMSF046P12+ CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
JMSF003G01+ CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
____________________________________________________________
consensus CCAGCTTCTTCAGCTCATCATCACATTCTCCTTGGAGCAAGTTTGCCATGTTGATCACCG
. : . : . : . : . : . :
JMFN033B21+ GAATTTCTCTCTGCGCCGGTGCCGAAGGGTCAAGATCATCACGAAAGTAACGTGGCGGGA
JMSF046B15+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
JMSF052A11+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
JMSF046P12+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
JMSF003G01+ GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
____________________________________________________________
consensus GAATTTCTTTCTGCGCCGCTGCCGGAGGGTCCAGGTCATGACGAAGGTATCGTGGAGGAA
. : . : . : . : . : . :
JMFN033B21+ CGATTTCCGGCGATTGTTTGGCCAATTCTTGAACACAAGGTACT
JMSF046B15+ CGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
JMSF052A11+ TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
JMSF046P12+ TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
JMSF003G01+ TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
____________________________________________________________
consensus TGGTTTCCGGCGATTCTTTGGCCAATTCTTTAACGCTAGGTACTAGCATAGATCCTCCAA
. : . : . : . : . : . :
JMSF046B15+ GTTTAGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGTAAACTC
JMSF052A11+ GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTC
JMSF046P12+ GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTC
JMSF003G01+ GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTCG
____________________________________________________________
consensus GGTTTGCTAATATACTTCTATCCATGATATGATGCCCAACTCAAGTTTAGTGGAAACTCG