Contig 000562:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F03Sequence364000562 (2)ref|XP_009600337.1|55.8PREDICTED: uncharacterized protein LOC104095826 [Nicotiana tomentosiformis]698007019 (2)emb|CDP05665.1|2e-36unnamed protein product [Coffea canephora]
JMSF004F12Sequence337000562 (2)ref|XP_009600337.1|50.1PREDICTED: uncharacterized protein LOC104095826 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF003F03+                                                                   CCTC
                      ____________________________________________________________
consensus                                                                     CCTC
 
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JMSF004F12+             TCGTACACNTTATAGAAGGAAGTNAAAGAGGTTTTTTAACAGGATAGTTCAAGANTAC
JMSF003F03+           ACTCGTACACTTTATAGAAGGAAGTAAAAGAGGTTTTTTAACAGGATAGTTCAAGACTAC
                      ____________________________________________________________
consensus             ACTCGTACACTTTATAGAAGGAAGTAAAAGAGGTTTTTTAACAGGATAGTTCAAGACTAC
 
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JMSF004F12+           TCTTAACTGCCAGACTGACACNGGAAATGAACCTGCAAATGATGTCTTAAGATTCTGGCA
JMSF003F03+           TCTTAACTGCCAGACTGACACCGGAAATGAACCTGCAAATGATGTCTTAAGATTCTGGCA
                      ____________________________________________________________
consensus             TCTTAACTGCCAGACTGACACCGGAAATGAACCTGCAAATGATGTCTTAAGATTCTGGCA
 
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JMSF004F12+           CCGGACTCTCCTAGCACCAACCCTTTCTACAGAAACCATATTGCTCGGTCCTCTATCTTG
JMSF003F03+           CCGGACTCTCCTAGCACCAACCCTTTCTACAGAAACCATATTGCTCGGTCCTCTATCTTG
                      ____________________________________________________________
consensus             CCGGACTCTCCTAGCACCAACCCTTTCTACAGAAACCATATTGCTCGGTCCTCTATCTTG
 
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JMSF004F12+           GTACAAGAAAGTAGAGAATGATGAAGATGTTGAGGCCATTACTACCGGAAAGAAAAAAAG
JMSF003F03+           GTACAAGAAAGTAGAGAATGATGAAGATGTTGAGGCCATTACTACCGGAAAGAAAAAAAG
                      ____________________________________________________________
consensus             GTACAAGAAAGTAGAGAATGATGAAGATGTTGAGGCCATTACTACCGGAAAGAAAAAAAG
 
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JMSF004F12+           AATAAATGGATGACCCGTCAAATCTTTTGCTCAGAAACAGAAGTGAGAGTGAAGTGNGAA
JMSF003F03+           AATAAATGGATGACCCGTCAAATCTTTTGCTCAGAAACAGAAGTGAGAGTGAAGTGCGAA
                      ____________________________________________________________
consensus             AATAAATGGATGACCCGTCAAATCTTTTGCTCAGAAACAGAAGTGAGAGTGAAGTGCGAA
 
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JMSF004F12+           GCGTTTCATGCTATTTTTTTAAAAAGAGAAATGGGATC                      
JMSF003F03+           GCGTTTCATGCTATTTTTTTAAAAAGAGAAATGGGATCAAAGATTGAATTTTTTTCTGTC
                      ____________________________________________________________
consensus             GCGTTTCATGCTATTTTTTTAAAAAGAGAAATGGGATCAAAGATTGAATTTTTTTCTGTC