Contig 000561:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028N23Sequence473000561 (3)ref|XP_009779111.1|4e-22PREDICTED: transcription factor TCP2-like [Nicotiana sylvestris] ref|XP_00977911604008422 (3)ref|XP_011096599.1|2e-09PREDICTED: transcription factor TCP2-like [Sesamum indicum] ref|XP_011096600.1|
JMSF003D20Sequence374000561 (3)724008422 (3)ref|XP_011096599.1|1e-09PREDICTED: transcription factor TCP2-like [Sesamum indicum] ref|XP_011096600.1|
JMSF031P20Sequence607000561 (3)ref|XP_009588487.1|7e-44PREDICTED: transcription factor TCP24-like isoform X2 [Nicotiana tomentosiformi650008422 (3)ref|XP_011096599.1|2e-08PREDICTED: transcription factor TCP2-like [Sesamum indicum] ref|XP_011096600.1|

Alignment

This contig is upended


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JMSF031P20+                                                                CGNTAAG
                      ____________________________________________________________
consensus                                                                  CGNTAAG
 
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JMSF031P20+           NTGAAGNGTATCGGTATCGGGGAACAAGGCCTTTAAAGAAGGAAGCTCCTCGATGAACGG
                      ____________________________________________________________
consensus             NTGAAGNGTATCGGTATCGGGGAACAAGGCCTTTAAAGAAGGAAGCTCCTCGATGAACGG
 
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JMSF031P20+           NGCCGCCGCCTTCAACAGCCACTCCACCGCCTTGCTGGGCTGGTCGTACCCGAGCCGGTC
                      ____________________________________________________________
consensus             NGCCGCCGCCTTCAACAGCCACTCCACCGCCTTGCTGGGCTGGTCGTACCCGAGCCGGTC
 
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JMFF028N23+              CAAATCGTAGAACTGCACCGCCGTGTTGACGGAGAGGCGCACGCGGCGGTCCCTCAA
JMSF031P20+           CTGCAAATCGTAGAACTGCACCGCCGTGTTGACGGAGAGGCGCACGCGGCGGTCCCTCAA
                      ____________________________________________________________
consensus             CTGCAAATCGTAGAACTGCACCGCCGTGTTGACGGAGAGGCGCACGCGGCGGTCCCTCAA
 
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JMFF028N23+           CCCCTTGGAAGTCCACACCTTACTGTGCCTGTCTTTCCCCCCCGAAGCTCGAGAAACCCG
JMSF031P20+           CCCCTTGGAAGTCCACACCTTACTGTGCCTGTCTTTCCCCCCCGAAGCTCGAGAAACCCG
JMSF003D20+                                                         GCTCGAGAAACCCG
                      ____________________________________________________________
consensus             CCCCTTGGAAGTCCACACCTTACTGTGCCTGTCTTTCCCCCCCGAAGCTCGAGAAACCCG
 
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JMFF028N23+           AACAATCCGCGACGACGGCCACCCACAGAGCCGCCCAAGCCCCCCGCCGCCGCCGCCGCC
JMSF031P20+           AACAATCCGCGACGACGGCCACCCACAGAGCCGCCCAAGCCCCCCGCCGCCGCCGCCGCC
JMSF003D20+           AACAATCCGCGACGACGGCCACCCACAGAGCCGCCCAAGCCCCCCGCCGCCGCCGCCGCC
                      ____________________________________________________________
consensus             AACAATCCGCGACGACGGCCACCCACAGAGCCGCCCAAGCCCCCCGCCGCCGCCGCCGCC
 
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JMFF028N23+           ATTACTCCTCTTGATCTCCCCATCTTCTTCTCCCCCATTTCCGATTCTTGGGTTTTCAAC
JMSF031P20+           ATTACTCCTCTTGATCTCCCCATCTTCTTCTCCCCCATTTCCGATTCTTGGGTTTTCAAC
JMSF003D20+           ATTACTCCTCTTGATCTCCCCATCTTCTTCTCCCCCATTTCCGATTCTTGGGTTTTCAAC
                      ____________________________________________________________
consensus             ATTACTCCTCTTGATCTCCCCATCTTCTTCTCCCCCATTTCCGATTCTTGGGTTTTCAAC
 
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JMFF028N23+           CTCCATGCCACTTTCATACCTCTCTCAAACACACCCCTCTTTCTTCCCCACCACCCAATT
JMSF031P20+           CTCCATGCCACTTTCATACCTCTCTCAAACACACCCCTCTTTCTTCCCCACCACCCAATT
JMSF003D20+           CTCCATGCCACTTTCATACCTCTCTCAAACACACCCCTCTTTCTTCCCCACCACCCAATT
                      ____________________________________________________________
consensus             CTCCATGCCACTTTCATACCTCTCTCAAACACACCCCTCTTTCTTCCCCACCACCCAATT
 
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JMFF028N23+           GGGCTTCTTCACTCGCTCAGAAACAATAAAGTTCGCAGCTTTCTTTCTTTGCAGATTCAG
JMSF031P20+           GGGCTTCTTCACTCGCTCAGAAACAATAAAGTTCGCAGCTTTCTTTCTTTGCAGATTCAG
JMSF003D20+           GGGCTTCTTCACTCGCTCAGAAACAATAAAGTTCGCAGCTTTCTTTCTTTGCAGATTCAG
                      ____________________________________________________________
consensus             GGGCTTCTTCACTCGCTCAGAAACAATAAAGTTCGCAGCTTTCTTTCTTTGCAGATTCAG
 
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JMFF028N23+           AATTGAAATTAGGGTTACGACTGAGAGAATAGGCAAAAGAACTGAGGGTTGAAGGACTCA
JMSF031P20+           AATTGAAATTAGGGTTACGACTGAGAGAATAGGCAAAAGAACTGAGGGTTGAAGGACTCA
JMSF003D20+           AATTGAAATTAGGGTTACGACTGAGAGAATAGGCAAAAGAACTGAGGGTTGAAGGACTCA
                      ____________________________________________________________
consensus             AATTGAAATTAGGGTTACGACTGAGAGAATAGGCAAAAGAACTGAGGGTTGAAGGACTCA
 
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JMFF028N23+           CTGAGTCACTATAGATGGTGGGGTTTCAGTGACATTTGCATTGATGATGATTACAC    
JMSF031P20+           CTGAGTCACTATAGATGGTGGGGTTTCAGTGACATTTGCATTGATGATGATTACAC    
JMSF003D20+           CTGAGTCACTATAGATGGTGGGGTTTCAGTGACATTTGCATTGATGATGATTACACAGTC
                      ____________________________________________________________
consensus             CTGAGTCACTATAGATGGTGGGGTTTCAGTGACATTTGCATTGATGATGATTACACAGTC