Contig 000555:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001H14Sequence404000555 (2)ref|XP_009624787.1|5e-18PREDICTED: putative late blight resistance protein homolog R1A-3 [Nicotiana tom
JMSF002L22Sequence283000555 (2)ref|XP_004238948.1|3e-08PREDICTED: putative late blight resistance protein homolog R1B-16 [Solanum lyco709004423 (2)ref|XP_009796673.1|138PREDICTED: uncharacterized protein LOC104243211 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF001H14+ TCGGCGAGTTCCCGTTTACGAAGCGGGTATTCGACGTCCAGAAA
                      ____________________________________________________________
consensus TCGGCGAGTTCCCGTTTACGAAGCGGGTATTCGACGTCCAGAAA
 
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JMSF001H14+ GCGTGTCCATTTCCTGTCGTAGTGGGATTTGGCGGCCACCACATATTGGTCGATGAGATC
                      ____________________________________________________________
consensus GCGTGTCCATTTCCTGTCGTAGTGGGATTTGGCGGCCACCACATATTGGTCGATGAGATC
 
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JMSF001H14+ CTCGGCCTTAGTGACCACCACCCGGATCTTGGTGATGAGGCGCTTGAGGATGTCGTTTTC
JMSF002L22+ CGGATCTTGGTGATGAGGCGCTTGAGGATGTCGTTTTC
                      ____________________________________________________________
consensus CTCGGCCTTAGTGACCACCACCCGGATCTTGGTGATGAGGCGCTTGAGGATGTCGTTTTC
 
. : . : . : . : . : . :
JMSF001H14+ GTAGCGGGACTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGTCGTCCAGGTCATCTAGAAG
JMSF002L22+ GTAGCGGGACTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGTCGTCCAGGTCATCTAGAAG
                      ____________________________________________________________
consensus GTAGCGGGACTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGTCGTCCAGGTCATCTAGAAG
 
. : . : . : . : . : . :
JMSF001H14+ CTGCTCGACGTCGTCCTTGAGGCCGAAGATGAGCTTGATGTTCTCTTTTAGAAGCTGGGT
JMSF002L22+ CTGCTCGACGTCGTCCTTGAGGCCGAAGATGAGCTTGATGTTCTCTTTTAGAAGCTGGGT
                      ____________________________________________________________
consensus CTGCTCGACGTCGTCCTTGAGGCCGAAGATGAGCTTGATGTTCTCTTTTAGAAGCTGGGT
 
. : . : . : . : . : . :
JMSF001H14+ CAAATTCTCTATCAGCAAATTCACCACCACTTCTGCCAT
JMSF002L22+ CAAATTCTCTATCAGCAAATTCACCACCACTTCTGCCATTTCTGCCGCCCTCCCTCAATC
                      ____________________________________________________________
consensus CAAATTCTCTATCAGCAAATTCACCACCACTTCTGCCATTTCTGCCGCCCTCCCTCAATC
 
. : . : . : . : . : . :
JMSF002L22+ TATCAGCTCGTTTTCAGCTCAAAGATTCTTAATAGAAGCCATTGCCACCTTCAATGATTC
                      ____________________________________________________________
consensus TATCAGCTCGTTTTCAGCTCAAAGATTCTTAATAGAAGCCATTGCCACCTTCAATGATTC