Contig 000553:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS084E03Sequence627000553 (3)ref|XP_009803147.1|5e-70PREDICTED: actin-related protein 9 isoform X2 [Nicotiana sylvestris]
JMSF002G19Sequence389000553 (3)ref|XP_011091179.1|4e-41PREDICTED: actin-related protein 9 [Sesamum indicum]164012633 (3)ref|XP_006354524.1|3e-22PREDICTED: actin-related protein 9-like [Solanum tuberosum]
JMSF025J17Sequence649000553 (3)ref|XP_009803147.1|3e-70PREDICTED: actin-related protein 9 isoform X2 [Nicotiana sylvestris]790012633 (3)ref|XP_009803146.1|4e-145PREDICTED: actin-related protein 9 isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS084E03+                                AGTTCCATGGTATTGTTGTTTTCCTTTGTGATGGGGGGC
JMSF025J17+                      ACCTGAACTTAGTTCCATGGTATTGTTGTTTTCCTTTGTGATGGGGGGC
                      ____________________________________________________________
consensus                        ACCTGAACTTAGTTCCATGGTATTGTTGTTTTCCTTTGTGATGGGGGGC
 
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JMFS084E03+           TCAGAAGTTTCACCATTGGTTATGCTATTATCTCCTCCTGATGAAGGTGGAGGGGGAGGG
JMSF025J17+           TCAGAAGTTTCACCATTGGTTATGCTATTATCTCCTCCTGATGAAGGTGGAGGGGGAGGG
                      ____________________________________________________________
consensus             TCAGAAGTTTCACCATTGGTTATGCTATTATCTCCTCCTGATGAAGGTGGAGGGGGAGGG
 
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JMFS084E03+           GTGTTTTCAAACACCTCAGTCCAAGTGAACGGTATCTCTTTCTTGTTATTTTGTGGAGGA
JMSF025J17+           GTGTTTTCAAACACCTCAGTCCAAGTGAACGGTATCTCTTTCTTGTTATTTTGTGGAGGA
                      ____________________________________________________________
consensus             GTGTTTTCAAACACCTCAGTCCAAGTGAACGGTATCTCTTTCTTGTTATTTTGTGGAGGA
 
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JMFS084E03+           TATGCATCAACTCGACCCATCTTCCGAGGATAAGAGCTATTAGGAACCTCCTCATCCAGG
JMSF025J17+           TATGCATCAACTCGACCCATCTTCCGAGGATAAGAGCTATTAGGAACCTCCTCATCCAGG
                      ____________________________________________________________
consensus             TATGCATCAACTCGACCCATCTTCCGAGGATAAGAGCTATTAGGAACCTCCTCATCCAGG
 
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JMFS084E03+           AACGGAATTTTCAACAGTGATGCAATAATGTCATAAGCCCTTTCGCGCTCCATATGCTGT
JMSF025J17+           AACGGAATTTTCAACAGTGATGCAATAATGTCATAAGCCCTTTCGCGCTCCATATGCTGT
JMSF002G19+                                          CATAAGCCCTTTCGCGCTCCATATGCTGT
                      ____________________________________________________________
consensus             AACGGAATTTTCAACAGTGATGCAATAATGTCATAAGCCCTTTCGCGCTCCATATGCTGT
 
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JMFS084E03+           GCGGTTGTAACCTGAGAATTGAGCATTTGATCCTGGACATTTCTTTTAGGCACTTGGCTG
JMSF025J17+           GCGGTTGTAACCTGAGAATTGAGCATTTGATCCTGGACATTTCTTTTAGGCACTTGGCTG
JMSF002G19+           GCGGTTGTAACCTGAGAATTGAGCATTTGATCCTGGACATTTCTTTTAGGCACTTGGCTG
                      ____________________________________________________________
consensus             GCGGTTGTAACCTGAGAATTGAGCATTTGATCCTGGACATTTCTTTTAGGCACTTGGCTG
 
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JMFS084E03+           GTTCGACGAGCAATGCAATGAGGAATGTTCAGTGGACTGTCCTGTTGAGCTCGTCCTATT
JMSF025J17+           GTTCGACGAGCAATGCAATGAGGAATGTTCAGTGGACTGTCCTGTTGAGCTCGTCCTATT
JMSF002G19+           GTTCGACGAGCAATGCAATGAGGAATGTTCAGTGGACTGTCCTGTTGAGCTCGTCCTATT
                      ____________________________________________________________
consensus             GTTCGACGAGCAATGCAATGAGGAATGTTCAGTGGACTGTCCTGTTGAGCTCGTCCTATT
 
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JMFS084E03+           CTAATATTTGCAGAACCTGGATTGATGACGACGAGATTGGAGCCGCGCTCCGCGAGGAGC
JMSF025J17+           CTAATATTTGCAGAACCTGGATTGATGACGACGAGATTGGAGCCGCGCTCCGCGAGGAGC
JMSF002G19+           CTAATATTTGCAGAACCTGGATTGATGACGACGAGATTGGAGCCGCGCTCCGCGAGGAGC
                      ____________________________________________________________
consensus             CTAATATTTGCAGAACCTGGATTGATGACGACGAGATTGGAGCCGCGCTCCGCGAGGAGC
 
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JMFS084E03+           TGAGAAGGTACTACTGTTTTCAGGTAATCCTGATTAAACGCCATAATCGCGATAATTACT
JMSF025J17+           TGAGAAGGTACTACTGTTTTCAGGTAATCCTGATTAAACGCCATAATCGCGATAATTACT
JMSF002G19+           TGAGAAGGTACTACTGTTTTCAGGTAATCCTGATTAAACGCCATAATCGCGATAATTACT
                      ____________________________________________________________
consensus             TGAGAAGGTACTACTGTTTTCAGGTAATCCTGATTAAACGCCATAATCGCGATAATTACT
 
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JMFS084E03+           CTTGGCTGAGCTTTTCTGTATATCTTCAGAAGAATAGGGAGGAGGGAAATAGGTATTAGC
JMSF025J17+           CTTGGCTGAGCTTTTCTGTATATCTTCAGAAGAATAGGGAGGAGGGAAATAGGTATTAGC
JMSF002G19+           CTTGGCTGAGCTTTTCTGTATATCTTCAGAAGAATAGGGAGGAGGGAAATAGGTATTAGC
                      ____________________________________________________________
consensus             CTTGGCTGAGCTTTTCTGTATATCTTCAGAAGAATAGGGAGGAGGGAAATAGGTATTAGC
 
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JMFS084E03+           TATTCTGCAACGGCGCCAAAATTGTCCGACGGCTTGCCAGTGCCAGAG            
JMSF025J17+           TATTCTGCAACGGCGCCAAAATTGTCCGACGGCTTGCCAGTGCCAGAGCTCGGAGCATCC
JMSF002G19+           TATTCTGCAACGGCGCCAAAATTGTCCGACGGCTTGCCAGTGCCAGAGCTCGGAGCATCC
                      ____________________________________________________________
consensus             TATTCTGCAACGGCGCCAAAATTGTCCGACGGCTTGCCAGTGCCAGAGCTCGGAGCATCC