Contig 000552:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049L13Sequence605000552 (2)ref|XP_004229552.1|215PREDICTED: uncharacterized protein LOC101265960 [Solanum lycopersicum]634006995 (2)
JMSF002G08Sequence357000552 (2)gb|KDP32272.1|4e-23hypothetical protein JCGZ_13197 [Jatropha curcas]751006995 (2)ref|XP_009354660.1|96.3PREDICTED: uncharacterized protein LOC103945804 [Pyrus x bretschneideri]

Alignment

This contig is upended


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JMFF049L13+                                                           CGCCGGAGGGTT
                      ____________________________________________________________
consensus                                                             CGCCGGAGGGTT
 
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JMFF049L13+           TTCCAGNCGAGGTGGTGACGACATGGCCAACGGCACTGTAACCCTGCGGTGGAACTGGTA
                      ____________________________________________________________
consensus             TTCCAGNCGAGGTGGTGACGACATGGCCAACGGCACTGTAACCCTGCGGTGGAACTGGTA
 
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JMFF049L13+           GCCAAACGTAGGCAGGGCCGGATTGGGTGATGGGCAAAGAGTCACTGCTCCATACAAGAG
                      ____________________________________________________________
consensus             GCCAAACGTAGGCAGGGCCGGATTGGGTGATGGGCAAAGAGTCACTGCTCCATACAAGAG
 
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JMFF049L13+           TGTAATCGGTTGGGGGCTTTAGGATTTCGCCGTTGTTGTCTTTTCCGACGAGAACCCAAC
                      ____________________________________________________________
consensus             TGTAATCGGTTGGGGGCTTTAGGATTTCGCCGTTGTTGTCTTTTCCGACGAGAACCCAAC
 
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JMFF049L13+           CGGAGAGGGGTTGGTTGTTGGGTTGGGCATAAGAACCCAGCATGCAAAATCCATCTGGGA
                      ____________________________________________________________
consensus             CGGAGAGGGGTTGGTTGTTGGGTTGGGCATAAGAACCCAGCATGCAAAATCCATCTGGGA
 
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JMFF049L13+           TTGAAGAAGGCTCAAAAATGGTTGCCCCAACATTGTTAGGCCCTCCTTCATAGCTCCTCC
JMSF002G08+              AAGAAGGCTCAAAAATGGTTGCCCCAACATTGTTAGGCCCTCCTTCATAGCTCCTCC
                      ____________________________________________________________
consensus             TTGAAGAAGGCTCAAAAATGGTTGCCCCAACATTGTTAGGCCCTCCTTCATAGCTCCTCC
 
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JMFF049L13+           ATATTTTCTTCAAATTTGAAATTTGGCACACTTGTAGTCCACCTAGATCAATATAACCAC
JMSF002G08+           ATATTTTCTTCAAATTTGAAATTTGGCACACTTGTAGTCCACCTAGATCAATATAACCAC
                      ____________________________________________________________
consensus             ATATTTTCTTCAAATTTGAAATTTGGCACACTTGTAGTCCACCTAGATCAATATAACCAC
 
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JMFF049L13+           TCCCAAAGCCACCACCTGATGGCCAAGTGGGTAATGGGGAGGGAAGCTTGAAAGTGGTAT
JMSF002G08+           TCCCAAAGCCACCACCTGATGGCCAAGTGGGTAATGGGGAGGGAAGCTTGAAAGTGGTAT
                      ____________________________________________________________
consensus             TCCCAAAGCCACCACCTGATGGCCAAGTGGGTAATGGGGAGGGAAGCTTGAAAGTGGTAT
 
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JMFF049L13+           CAATAGGCAAAGTAGGGATATTTCCCATTACTCACAATTCTTCAACACCAAATCCCAAAT
JMSF002G08+           CAATAGGCAAAGTAGGGATATTTCCCATTACTCACAATTCTTCAACACCAAATCCCAAAT
                      ____________________________________________________________
consensus             CAATAGGCAAAGTAGGGATATTTCCCATTACTCACAATTCTTCAACACCAAATCCCAAAT
 
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JMFF049L13+           AAATAAATGATGTGTGAATGTGATGATGAGAGAAGTGAGGTTATTATAAGATCGATAATG
JMSF002G08+           AAATAAATGATGTGTGAATGTGATGATGAGAGAAGTGAGGTTATTATAAGATCGATAATG
                      ____________________________________________________________
consensus             AAATAAATGATGTGTGAATGTGATGATGAGAGAAGTGAGGTTATTATAAGATCGATAATG
 
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JMFF049L13+           AACAAATGAATTATATATAATATATGTAGCTTCAATTCCAACGTAGGATGAGA       
JMSF002G08+           AACAAATGAATTATATATAATATATGTAGCTTCAATTCCAACGTAGGATGAGATCGAATC
                      ____________________________________________________________
consensus             AACAAATGAATTATATATAATATATGTAGCTTCAATTCCAACGTAGGATGAGATCGAATC