Contig 000545:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS151C04Sequence597000545 (3)ref|XP_009800989.1|5e-72PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti
JMSF001K11Sequence289000545 (3)ref|XP_009624222.1|3e-16PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti728001262 (3)ref|XP_009800989.1|3e-19PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti
JMSF001L11Sequence388000545 (3)ref|XP_009800989.1|1e-30PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti725001262 (3)ref|XP_009800989.1|1e-18PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Nicoti

Alignment

This contig is upended


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JMFS151C04+                                         CTAGCAAATATCCTAAAGCCAGAATGCTCA
                      ____________________________________________________________
consensus                                           CTAGCAAATATCCTAAAGCCAGAATGCTCA
 
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JMFS151C04+           ACCATAGCCAAAGGATAGCCATGTAATATGATCATGCGAGCAAGATCAAGCCGACTCCTT
                      ____________________________________________________________
consensus             ACCATAGCCAAAGGATAGCCATGTAATATGATCATGCGAGCAAGATCAAGCCGACTCCTT
 
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JMFS151C04+           CTGTTATCAAAATTAAAACTTCCACCTTCAATCCCATCTTTTACGCAGTTTTGATCTAGC
                      ____________________________________________________________
consensus             CTGTTATCAAAATTAAAACTTCCACCTTCAATCCCATCTTTTACGCAGTTTTGATCTAGC
 
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JMFS151C04+           TTAGTTCTTACAATGCTGACTGCTTCATCATTTCCGTGCTCTTGATCAAAACTAAAATTT
                      ____________________________________________________________
consensus             TTAGTTCTTACAATGCTGACTGCTTCATCATTTCCGTGCTCTTGATCAAAACTAAAATTT
 
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JMFS151C04+           GCAACAGCAAAAGTTGTTTCCTTTCTCTTGCCCCTCGTTAGCAACTGGCTTATGTCTTGG
JMSF001L11+                                           CCTCGTTAGCAACTGGCTTATGTCTTGG
                      ____________________________________________________________
consensus             GCAACAGCAAAAGTTGTTTCCTTTCTCTTGCCCCTCGTTAGCAACTGGCTTATGTCTTGG
 
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JMFS151C04+           TTAGATCTTCTTCTACATCTGATTAAATGATTCCTCAAATGCGAAGTTCCACTGGTACTT
JMSF001L11+           TTAGATCTTCTTCTACATCTGATTAAATGATTCCTCAAATGCGAAGTTCCACTGGTACTT
                      ____________________________________________________________
consensus             TTAGATCTTCTTCTACATCTGATTAAATGATTCCTCAAATGCGAAGTTCCACTGGTACTT
 
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JMFS151C04+           GACCCACTAAGTTTCCTATTACAGTGCCTACAAATAGCTATGAAAGTATCACCTTTCCTG
JMSF001K11+                      TTTCCTATTACAGTGCCTACAAATAGCTATGAAAGTATCACCTTTCCTG
JMSF001L11+           GACCCACTAAGTTTCCTATTACAGTGCCTACAAATAGCTATGAAAGTATCACCTTTCCTG
                      ____________________________________________________________
consensus             GACCCACTAAGTTTCCTATTACAGTGCCTACAAATAGCTATGAAAGTATCACCTTTCCTG
 
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JMFS151C04+           ACCCTATCAAAATCATTCCAAACGACTGATTTCAGTCTACTAGAATTGACTATGACCGAC
JMSF001K11+           ACCCTATCAAAATCATTCCAAACGACTGATTTCAGTCTACTAGAATTGACTATGACCGAC
JMSF001L11+           ACCCTATCAAAATCATTCCAAACGACTGATTTCAGTCTACTAGAATTGACTATGACCGAC
                      ____________________________________________________________
consensus             ACCCTATCAAAATCATTCCAAACGACTGATTTCAGTCTACTAGAATTGACTATGACCGAC
 
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JMFS151C04+           TCATCTGCTATCTCCATTGCTTTCCTGATACTCTACCAACACCTGGGTTAGGGTTTGTTC
JMSF001K11+           TCATCTGCTATCTCCATTGCTTTCCTGATACTCTACCAACACCTGGGTTAGGGTTTGTTC
JMSF001L11+           TCATCTGCTATCTCCATTGCTTTCCTGATACTCTACCAACACCTGGGTTAGGGTTTGTTC
                      ____________________________________________________________
consensus             TCATCTGCTATCTCCATTGCTTTCCTGATACTCTACCAACACCTGGGTTAGGGTTTGTTC
 
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JMFS151C04+           CACAGCTGTTCAGGCATGTGTGTAGTAAATACGAGTGAGTAAGTGTTTGTGTGAGCGAGA
JMSF001K11+           CACAGCTGTTCAGGCATGTGTGTAGTAAATACGAGTGAGTAAGTGTTTGTGTGAGCGAGA
JMSF001L11+           CACAGCTGTTCAGGCATGTGTGTAGTAAATACGAGTGAGTAAGTGTTTGTGTGAGCGAGA
                      ____________________________________________________________
consensus             CACAGCTGTTCAGGCATGTGTGTAGTAAATACGAGTGAGTAAGTGTTTGTGTGAGCGAGA
 
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JMFS151C04+           AAGAGCGAGCGAGCGAGCGAGAGAGAA                                 
JMSF001K11+           AAGAGCGAGCGAGCGAGCGAGAGAGAAACGGTTTGGTTAAGCGAGATATGTGTCAGCGTC
JMSF001L11+           AAGAGCGAGCGAGCGAGCGAGAGAGAAACGGTTTGGTTAAGCGAGATATGTGTCAGCGTC
                      ____________________________________________________________
consensus             AAGAGCGAGCGAGCGAGCGAGAGAGAAACGGTTTGGTTAAGCGAGATATGTGTCAGCGTC