Contig 000540:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+                  TGAAATACAGAAATTAATGTCAAATACTGATCTAGAAAGAGATCAATTCTTTA
                      ____________________________________________________________
consensus                    TGAAATACAGAAATTAATGTCAAATACTGATCTAGAAAGAGATCAATTCTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           AGTCAAGCATAAGCAGCTTAGTTTCAGAATAAGTTGCAAAAGTGAAATCTTGCACTAGAA
                      ____________________________________________________________
consensus             AGTCAAGCATAAGCAGCTTAGTTTCAGAATAAGTTGCAAAAGTGAAATCTTGCACTAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           ATGTATTAAGAAGAACAAAAACAGAAGCAATAAAACAAAAACAAAACAGAAAAGCATATA
                      ____________________________________________________________
consensus             ATGTATTAAGAAGAACAAAAACAGAAGCAATAAAACAAAAACAAAACAGAAAAGCATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           TTTAATTATGTTTCCAAGTCATCCTTTCCCCAGGGAATTATGAGCTCACAAACAATCTCA
                      ____________________________________________________________
consensus             TTTAATTATGTTTCCAAGTCATCCTTTCCCCAGGGAATTATGAGCTCACAAACAATCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           TCTTTTCTATTAAGAAACCCACCGAAGTGCTCCCTAGATGGCCAAGATCATAAGATGCAT
                      ____________________________________________________________
consensus             TCTTTTCTATTAAGAAACCCACCGAAGTGCTCCCTAGATGGCCAAGATCATAAGATGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           CAGCACTGTCCCCAGTACCCAGTCCAACATCTTCATTTTGTTTAGCAGTTGCAAGGAGCT
                      ____________________________________________________________
consensus             CAGCACTGTCCCCAGTACCCAGTCCAACATCTTCATTTTGTTTAGCAGTTGCAAGGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           CTTCTGTCAAAGCAATAACCTCGACAAGTTCCTTCTCCATGTCCAAATATTCAGAGTTGC
                      ____________________________________________________________
consensus             CTTCTGTCAAAGCAATAACCTCGACAAGTTCCTTCTCCATGTCCAAATATTCAGAGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           CATGGTCATCATTTAATAGTGCGCGAACCTGTTGAAGCTGTTCTCTGTAAGTAGATAGAT
JMSF001E07+                       TTAATAGTGCGCGAACCTGTTGAAGCTGTTCTCTGTAAGTAGATAGAT
                      ____________________________________________________________
consensus             CATGGTCATCATTTAATAGTGCGCGAACCTGTTGAAGCTGTTCTCTGTAAGTAGATAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           TCGAAGCCAATTCTTCAATGCTAACCTCTTCGCCTCCGCTNTGCATCTTTAACAAAATCC
JMSF001E07+           TCGAAGCCAATTCTTCAATGCTAACCTCTTCGCCTCCGCTTTGCATCTTTAACAAAATCC
                      ____________________________________________________________
consensus             TCGAAGCCAATTCTTCAATGCTAACCTCTTCGCCTCCGCTTTGCATCTTTAACAAAATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046O07+           TTTATATTTCTCTTCGGCAAAATTTCTTNGAATTCGACAGAGAT                
JMSF001E07+           TTTATATTTCTCTTCGGCAAAATTTCTTCGAATTCGACAGAGATTGATTGAAGGTCTGAA
                      ____________________________________________________________
consensus             TTTATATTTCTCTTCGGCAAAATTTCTTCGAATTCGACAGAGATTGATTGAAGGTCTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001E07+           CGAGTATTCTTTGCGTTGGAACGATTGCGCGAGGAGGGAAACAAAAAACCCTCGTATCCC
                      ____________________________________________________________
consensus             CGAGTATTCTTTGCGTTGGAACGATTGCGCGAGGAGGGAAACAAAAAACCCTCGTATCCC