Contig 000539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001C20Sequence350000539 (2)817002944 (3)ref|XP_009802956.1|2e-87PREDICTED: KH domain-containing protein At4g18375 [Nicotiana sylvestris]
JMSF005K23Sequence372000539 (2)ref|XP_004234980.1|1e-10PREDICTED: KH domain-containing protein At4g18375 [Solanum lycopersicum]337002944 (3)ref|XP_004234980.1|3e-24PREDICTED: KH domain-containing protein At4g18375 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF005K23+                   TCGGCGGTGCTGGTTGGACTGCGGCGCATAATGGTGGNTGCTATGCTGATTA
                      ____________________________________________________________
consensus                     TCGGCGGTGCTGGTTGGACTGCGGCGCATAATGGTGGNTGCTATGCTGATTA
 
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JMSF005K23+           TACCTCTGTTTTGTTCTGGGTAGGTTATCGGAATCGTAGTCCTGGTCGTAGTAATACCTC
                      ____________________________________________________________
consensus             TACCTCTGTTTTGTTCTGGGTAGGTTATCGGAATCGTAGTCCTGGTCGTAGTAATACCTC
 
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JMSF005K23+           TTAGATCTTGATCTATCCATGTCCTTATCTCCAAATCCGACAAAGGTTACTCTCAAATTC
JMSF001C20+                     ATCTATCCATGTCCTTATCTCCAAATCCGACAAAGGTTACTCTCAAATTC
                      ____________________________________________________________
consensus             TTAGATCTTGATCTATCCATGTCCTTATCTCCAAATCCGACAAAGGTTACTCTCAAATTC
 
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JMSF005K23+           TCAATCCACACTCACAAATTCCACAATCTGAAAGTTTAGGGTTTCCTCTAATCGAAAATC
JMSF001C20+           TCAATCCACACTCACAAATTCCACAATCTGAAAGTTTAGGGTTTCCTCTAATCGAAAATC
                      ____________________________________________________________
consensus             TCAATCCACACTCACAAATTCCACAATCTGAAAGTTTAGGGTTTCCTCTAATCGAAAATC
 
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JMSF005K23+           CGTGAGAAAAAGATGAGAATGTAATGTCCTTCCAAAATTTCTGCAAATTCCCTGTGAGAA
JMSF001C20+           CGTGAGAAAAAGATGAGAATGTAATGTCCTTCCAAAATTTCTGCAAATTCCCTGTGAGAA
                      ____________________________________________________________
consensus             CGTGAGAAAAAGATGAGAATGTAATGTCCTTCCAAAATTTCTGCAAATTCCCTGTGAGAA
 
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JMSF005K23+           TGCTCAAACCCTACCAGGAAATTTGAGAGTTCAACACATCATTTGGGCAAAGAAGAAAAC
JMSF001C20+           TGCTCAAACCCTACCAGGAAATTTGAGAGTTCAACACATCATTTGGGCAAAGAAGAAAAC
                      ____________________________________________________________
consensus             TGCTCAAACCCTACCAGGAAATTTGAGAGTTCAACACATCATTTGGGCAAAGAAGAAAAC
 
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JMSF005K23+           ACTTCGGCCAAGATATTGT                                         
JMSF001C20+           ACTTCGGCCAAGATATTGTGGAGATGCCTCATCATTACAGCTACTTCTATAAATGCTTTT
                      ____________________________________________________________
consensus             ACTTCGGCCAAGATATTGTGGAGATGCCTCATCATTACAGCTACTTCTATAAATGCTTTT
 
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JMSF001C20+           GAGGAGAACAAAAAAATAATTAAATTTAAAAAAACTCAAATTTGTAATTTCTTTTTTTTC
                      ____________________________________________________________
consensus             GAGGAGAACAAAAAAATAATTAAATTTAAAAAAACTCAAATTTGTAATTTCTTTTTTTTC