Contig 000536:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS038G09Sequence566000536 (2)ref|XP_009795952.1|8e-23PREDICTED: RNA-binding protein 34 [Nicotiana sylvestris]
JMFS167C03Sequence615000536 (2)ref|XP_007040634.1|1e-95RNA-binding family protein, putative [Theobroma cacao] gb|EOY25135.1| RNA-bindin

Alignment

This contig is upended


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JMFS038G09+              AACTGGTTTTAACAAATTATCAGCATGATACAGAGTAACAGAGATCATTGTATAATC
                      ____________________________________________________________
consensus                AACTGGTTTTAACAAATTATCAGCATGATACAGAGTAACAGAGATCATTGTATAATC
 
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JMFS038G09+           ACCGGAGACTTCCACATTCCCCAGTATAGTGGTGATACAATGAAATGCCTATTAAAACTT
                      ____________________________________________________________
consensus             ACCGGAGACTTCCACATTCCCCAGTATAGTGGTGATACAATGAAATGCCTATTAAAACTT
 
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JMFS038G09+           TCTAAGTTTCTTTTTCCTACCAGCAGCACTTGAAGGAGTTCGGTTTTCCAGCTTGCGCTT
                      ____________________________________________________________
consensus             TCTAAGTTTCTTTTTCCTACCAGCAGCACTTGAAGGAGTTCGGTTTTCCAGCTTGCGCTT
 
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JMFS038G09+           GGTCCCGGCTTGTTTGGAAGGAGCGGCAGCGTTTTTCAGCGCCTTCGCCTTTCTGGAAGC
                      ____________________________________________________________
consensus             GGTCCCGGCTTGTTTGGAAGGAGCGGCAGCGTTTTTCAGCGCCTTCGCCTTTCTGGAAGC
 
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JMFS038G09+           GACTGCTGGTCGCTTTGAATTCCGCTCAGTCTGCTTCTTCGCCACCTGCAATCTTGCCTT
                      ____________________________________________________________
consensus             GACTGCTGGTCGCTTTGAATTCCGCTCAGTCTGCTTCTTCGCCACCTGCAATCTTGCCTT
 
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JMFS038G09+           AGAGTTTGGCTGCTCGCTGGTTCTGGGACGGGACGACTTCTTTTGAACAGACGATGATGA
JMFS167C03+                                                       GAACAGACGATGATGA
                      ____________________________________________________________
consensus             AGAGTTTGGCTGCTCGCTGGTTCTGGGACGGGACGACTTCTTTTGAACAGACGATGATGA
 
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JMFS038G09+           CTTCGTTGCCCGCATGCCCTGGTAGGCGAGGGACATCTTTTCGGTTCTCTTGCCCCCGCT
JMFS167C03+           CTTCGTTGCCCGCATGCCCTGGTAGGCGAGGGACATCTTTTCGGTTCTCTTGCCCCCGCT
                      ____________________________________________________________
consensus             CTTCGTTGCCCGCATGCCCTGGTAGGCGAGGGACATCTTTTCGGTTCTCTTGCCCCCGCT
 
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JMFS038G09+           GCCTGGAGTTGTGGGCTCCGCAGCAAACTTCTTTGTTGGAGAGGCGTTCGTGTTCTCGTT
JMFS167C03+           GCCTGGAGTTGTGGGCTCCGCAGCAAACTTCTTTGTTGGAGAGGCGTTCGTGTTCTCGTT
                      ____________________________________________________________
consensus             GCCTGGAGTTGTGGGCTCCGCAGCAAACTTCTTTGTTGGAGAGGCGTTCGTGTTCTCGTT
 
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JMFS038G09+           TGAGTTCTTTCTCTTTGATGGGGTCGCGGTTGCCTTGGCATGAGAAAGCCCTTAGCTCCC
JMFS167C03+           TGAGTTCTTTCTCTTTGATGGGGTCGCGGTTGCCTTGGCATGAGAAAG-CCTTAGCTCCC
                      ____________________________________________________________
consensus             TGAGTTCTTTCTCTTTGATGGGGTCGCGGTTGCCTTGGCATGAGAAAGCCCTTAGCTCCC
 
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JMFS038G09+           GATCTCGTAAGTTCAGACGCTTCTTCACA                               
JMFS167C03+           GATCTCGTAAGTTCAGACGCTTCTTCACAACAAGATTGACAGCTTCCTTTGTTTTGAATA
                      ____________________________________________________________
consensus             GATCTCGTAAGTTCAGACGCTTCTTCACAACAAGATTGACAGCTTCCTTTGTTTTGAATA
 
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JMFS167C03+           ACACATAAGCAACACCTTTTCCCAGGAGTGTATTAGAATCTCTGATAACCCGAACAGCTT
                      ____________________________________________________________
consensus             ACACATAAGCAACACCTTTTCCCAGGAGTGTATTAGAATCTCTGATAACCCGAACAGCTT
 
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JMFS167C03+           CCACACTTTCTTCCAGATTTTTAATTCCACAGAACAACTGATAAATCTCTTCGTCCTTAA
                      ____________________________________________________________
consensus             CCACACTTTCTTCCAGATTTTTAATTCCACAGAACAACTGATAAATCTCTTCGTCCTTAA
 
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JMFS167C03+           CATCAAATGGCAGGTTGCCCACAAACAACGTCCTTTTATTATCATACAAGGGACCACAGT
                      ____________________________________________________________
consensus             CATCAAATGGCAGGTTGCCCACAAACAACGTCCTTTTATTATCATACAAGGGACCACAGT
 
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JMFS167C03+           CACCCTTCATCTTCTTACGAGGAGGGCATGCCCTGTCAACTCGGATATGATTTCCTCCTA
                      ____________________________________________________________
consensus             CACCCTTCATCTTCTTACGAGGAGGGCATGCCCTGTCAACTCGGATATGATTTCCTCCTA
 
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JMFS167C03+           CCACTGTCATGTTAAGAGCCAACGAATCATGGGCAGATTCCTCCGTTTTGAAAACAATGT
                      ____________________________________________________________
consensus             CCACTGTCATGTTAAGAGCCAACGAATCATGGGCAGATTCCTCCGTTTTGAAAACAATGT
 
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JMFS167C03+           ATGCATGTACACCGTCAGCATTCTCATTCAGTTGTTTCTTCAGTACAGCACCCTTCCTTG
                      ____________________________________________________________
consensus             ATGCATGTACACCGTCAGCATTCTCATTCAGTTGTTTCTTCAGTACAGCACCCTTCCTTG