Contig 000535:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS165G10Sequence604000535 (2)emb|CBI34431.3|3e-06unnamed protein product [Vitis vinifera]
JMSF044M22Sequence367000535 (2)ref|XP_010658715.1|1e-06PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera]734008636 (2)gb|KDO76413.1|2e-103hypothetical protein CISIN_1g007950mg [Citrus sinensis]

Alignment

This contig is upended


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JMFS165G10+                                                                  TGCCA
                      ____________________________________________________________
consensus                                                                    TGCCA
 
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JMFS165G10+           TTGATGTGAGCAAAATTCAAAAACCCAAATTTCATGTAAAACTAAGAACGTCCCTAAGTT
                      ____________________________________________________________
consensus             TTGATGTGAGCAAAATTCAAAAACCCAAATTTCATGTAAAACTAAGAACGTCCCTAAGTT
 
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JMFS165G10+           ATATAAAATGCCAATGGGAAACAAACATTCAATCTTTGATTTCCAATTTGCAAAATTCAC
                      ____________________________________________________________
consensus             ATATAAAATGCCAATGGGAAACAAACATTCAATCTTTGATTTCCAATTTGCAAAATTCAC
 
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JMFS165G10+           ATCACATTGTAAGAAAACACAAATGCATTCAAGAAATTAAAAAGAATTATTAGCCCTAAA
                      ____________________________________________________________
consensus             ATCACATTGTAAGAAAACACAAATGCATTCAAGAAATTAAAAAGAATTATTAGCCCTAAA
 
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JMSF044M22+                                GATTATCCTTATTGATTTCCTCTCTGCGCCGCTTGCGTT
JMFS165G10+           GAAAGATATGGGAAAACTAACGATTATCCTTATTGATTTCCTCTCTGCGCCGCTTGCGTT
                      ____________________________________________________________
consensus             GAAAGATATGGGAAAACTAACGATTATCCTTATTGATTTCCTCTCTGCGCCGCTTGCGTT
 
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JMSF044M22+           TGCGCGCCCAATCCACCACGCTGCTAAAGCTCTCACCCCCAGTTTTGGAGCCGGGCAAGT
JMFS165G10+           TGCGCGCCCAATCCACCACGCTGCTAAAGCTCTCACCCCCAGTTTTGGAGCCGGGCAAGT
                      ____________________________________________________________
consensus             TGCGCGCCCAATCCACCACGCTGCTAAAGCTCTCACCCCCAGTTTTGGAGCCGGGCAAGT
 
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JMSF044M22+           CGGGCAGAATCTCAATCCTCAGGGTCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAAAG
JMFS165G10+           CGGGCAGAATCTCAATCCTCAGGGTCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAAAG
                      ____________________________________________________________
consensus             CGGGCAGAATCTCAATCCTCAGGGTCCGGTCGGAGAAATTGCTGTCGTTGAAGGCGAAAG
 
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JMSF044M22+           CGAAGTTGGCGTCGGAAGCCGACCCACGGTGACTGGAGGGAGAAAAATCGAAGTCCATTA
JMFS165G10+           CGAAGTTGGCGTCGGAAGCCGACCCACGGTGACTGGAGGGAGAAAAATCGAAGTCCATTA
                      ____________________________________________________________
consensus             CGAAGTTGGCGTCGGAAGCCGACCCACGGTGACTGGAGGGAGAAAAATCGAAGTCCATTA
 
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JMSF044M22+           TCGGCCGCTGATCAAACAGTTNTCGAGTTTTGATTTTTCATACACGGATAATGACTACAA
JMFS165G10+           TCGGCCGCTGATCAAACAGTT-CCGAGTTTTGATTTTTCATACACGGATAATGACTACAA
                      ____________________________________________________________
consensus             TCGGCCGCTGATCAAACAGTTNTCGAGTTTTGATTTTTCATACACGGATAATGACTACAA
 
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JMSF044M22+           AACTTTACACAAAGTACTACAAATGAGGATGAGGAAGAGAACCCAAAGCGGGTATTGGGT
JMFS165G10+           AACTTTACACAAAGTACTACAAATGAGGATGAGGAAGAGAACCCAAAGCGGGTATTGGGT
                      ____________________________________________________________
consensus             AACTTTACACAAAGTACTACAAATGAGGATGAGGAAGAGAACCCAAAGCGGGTATTGGGT
 
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JMSF044M22+           TTTCC                                                       
JMFS165G10+           TTTCCAGGGATGGGGTGGTTGGCATTCGGATTCCGAGGGTTAGTTCGAAAATGGTTACAA
                      ____________________________________________________________
consensus             TTTCCAGGGATGGGGTGGTTGGCATTCGGATTCCGAGGGTTAGTTCGAAAATGGTTACAA