Contig 000530:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS087B09+                                                                  ACATC
                      ____________________________________________________________
consensus                                                                    ACATC
 
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JMFS087B09+           GGCCTCGGATCTCACAGAAAACATGNGGATAGCAACACCAACACNCCGCCAAGGAAATTC
                      ____________________________________________________________
consensus             GGCCTCGGATCTCACAGAAAACATGNGGATAGCAACACCAACACNCCGCCAAGGAAATTC
 
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JMFS087B09+           CCGCATCATGCCATCTGAAAGGATCACATATTTTGGTTGACTAGTTTCAAAGTCAATACA
                      ____________________________________________________________
consensus             CCGCATCATGCCATCTGAAAGGATCACATATTTTGGTTGACTAGTTTCAAAGTCAATACA
 
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JMFS087B09+           AAACTCCCAATATGCACCATATTCCAAAGAAAATGCTCCATCCTGGCCATATTTGCAGTA
                      ____________________________________________________________
consensus             AAACTCCCAATATGCACCATATTCCAAAGAAAATGCTCCATCCTGGCCATATTTGCAGTA
 
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JMFS087B09+           CTTGTATGTAAACAGTATTAAGGAAGATTGACGAAAAAGAATAATGAGGAACAACGACAT
                      ____________________________________________________________
consensus             CTTGTATGTAAACAGTATTAAGGAAGATTGACGAAAAAGAATAATGAGGAACAACGACAT
 
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JMFS087B09+           CATCCTGCCTATAACAAGAAGAACCACGAGGATATTTTAAAGGAAAGTCATCTTTTCCCA
JMFS126A07+                                              TTTAAAGGAAAGTCATCTTTTCCCA
                      ____________________________________________________________
consensus             CATCCTGCCTATAACAAGAAGAACCACGAGGATATTTTAAAGGAAAGTCATCTTTTCCCA
 
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JMFS087B09+           TCACACAATCTGCTTGCCAAAACGAGTCACCAGCATAATTGAGCTTAACTCCATTTTGAA
JMFS126A07+           TCACACAATCTGCTTGCCANAACGAGTCACCAGCATAATTGAGCTTAACTCCATTTTGAA
                      ____________________________________________________________
consensus             TCACACAATCTGCTTGCCAAAACGAGTCACCAGCATAATTGAGCTTAACTCCATTTTGAA
 
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JMFS087B09+           CCTTCCACTGCCCCAGTTTTAAGGAACTCCCGATCACATAAACAGATGTTCCTTCATCTA
JMFS126A07+           CCTTCCACTGCCCCAGTTTTAAGGAACTCCCGATCACATAAACAGATGTTCCTTCATCTA
                      ____________________________________________________________
consensus             CCTTCCACTGCCCCAGTTTTAAGGAACTCCCGATCACATAAACAGATGTTCCTTCATCTA
 
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JMFS087B09+           CATGTGGGCAGCATATTTTGAACTGTATGAGGGCCGAATCT                   
JMFS126A07+           CATGTGGGCAGCATATTTTGAACTGTATGAGGGCCGAATCTTCCTGGTCCAACTTGCTTT
                      ____________________________________________________________
consensus             CATGTGGGCAGCATATTTTGAACTGTATGAGGGCCGAATCTTCCTGGTCCAACTTGCTTT
 
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JMFS126A07+           GAATGACCCCAAGGGGCATTTCCACGTCTAAATTCCATGTTCTTCGGAAGATGACATCTT
JMFS073G05+                      AGGGGCATTTCCACGTCTAAATTCCATGTTCTTCGGAAGATGACATCTT
                      ____________________________________________________________
consensus             GAATGACCCCAAGGGGCATTTCCACGTCTAAATTCCATGTTCTTCGGAAGATGACATCTT
 
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JMFS126A07+           TAAATGCACTTTTGAAAGGAATATCATCAGAACCAGTCTGCCAAAGATCACGAAGCTCTA
JMFS073G05+           TAAATGCACTTTTGAAAGGAATATCATCAGAACCAGTCTGCCAAAGATCACGAAGCTCTA
                      ____________________________________________________________
consensus             TAAATGCACTTTTGAAAGGAATATCATCAGAACCAGTCTGCCAAAGATCACGAAGCTCTA
 
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JMFS126A07+           CCAACAGACCATCCTCAAGTCCATCAGGCAACAGTAGCTTCCTCTTCTTTCCAACCTCCC
JMFS073G05+           CCAACAGACCATCCTCAAGTCCATCAGGCAACAGTAGCTTCCTCTTCTTTCCAACCTCCC
JMFS050G04+                            AGTCCATCAGGCAACAGTAGCTTCCTNTTCTTTCCAACCTCCC
                      ____________________________________________________________
consensus             CCAACAGACCATCCTCAAGTCCATCAGGCAACAGTAGCTTCCTCTTCTTTCCAACCTCCC
 
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JMFS126A07+           ATCTCACAACATTTTTCTCATCATCCACCACATAATAACTGTATTCACTTTTGAATCCCG
JMFS073G05+           ATCTCACAACATTTTTCTCATCATCCACCACATAATAACTGTATTCACTTTTGAATCCCG
JMFS050G04+           ATCTCACAACATTTTTCTCATCATCCACCACATAATAACTGTATTCACTTTTGAATCCCG
                      ____________________________________________________________
consensus             ATCTCACAACATTTTTCTCATCATCCACCACATAATAACTGTATTCACTTTTGAATCCCG
 
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JMFS126A07+           GAGGAACAGGTATGCTTCCGGACCATATAAGCTCATCCCCCTGATGAGAAGGTCTCAACA
JMFS073G05+           GAGGAACAGGTATGCTTCCGGACCATATAAGCTCATCCCCCTGATGAGAAGGTCTCAACA
JMFS050G04+           GAGGAACAGGTATGCTTCCGGACCATATAAGCTCATCCCCCTGATGAGAAGGTCTCAACA
JMFS160E09+              GAACAGGTATGCTTCCGGACCATATAAGCTCATCCCCCTGATGAGAAGGTCTCAACA
                      ____________________________________________________________
consensus             GAGGAACAGGTATGCTTCCGGACCATATAAGCTCATCCCCCTGATGAGAAGGTCTCAACA
 
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JMFS126A07+           ACAGACCCTTTTTCACATTCCATGAACCGAGCAATGCTTCTGAACCGCACACTAGAAGGT
JMFS073G05+           ACAGACCCTTTTTCACATTCCATGAACCGAGCAATGCTTCTGAACCGCACACTAGAAGGT
JMFS050G04+           ACAGACCCTTTTTCACATTCCATGAACCGAGCAATGCTTTTGTACCGCACATTAGAAGGT
JMFS160E09+           ACAGACCCTTTTTCACATTCCATGAACCGAGCAATGCTTCTGAACCGCACACTAGAAGGT
                      ____________________________________________________________
consensus             ACAGACCCTTTTTCACATTCCATGAACCGAGCAATGCTTCTGAACCGCACACTAGAAGGT
 
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JMFS126A07+           GCTGTCCCCATTGGGTATAATATGGTATTCTGAAGCTCAACCTAA               
JMFS073G05+           GCTGTCCCCATTGGGTATAATATGGTATTCTGAAGCTCAACCTAACTGACTTGAGAGACT
JMFS050G04+           GCTGTCCCCATTGGGTATAATATGGTATTCTGAAGCTCAACCTAACTGACTTGAGAGACT
JMFS160E09+           GCTGTCCCCATTGGGTATAATATGGTATTCTGAAGCTCAACCTAACTGACTTGAGAGACT
                      ____________________________________________________________
consensus             GCTGTCCCCATTGGGTATAATATGGTATTCTGAAGCTCAACCTAACTGACTTGAGAGACT
 
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JMFS073G05+           TTTTGCCACATAATAACCTCAGATTCACCATCTTCTACAGTTCTACTCCAATAAGACCAC
JMFS050G04+           TTTTGCCACATAATAACCTCAGATTCACCATCTTCTACAGTTCTACTCCAATAAGACCAC
JMFS160E09+           TTTTGCCACATAATAACCTCAGATTCACCATCTTCTACAGTTCTACTCCAATAAGACCAC
                      ____________________________________________________________
consensus             TTTTGCCACATAATAACCTCAGATTCACCATCTTCTACAGTTCTACTCCAATAAGACCAC
 
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JMFS073G05+           TGAAGACCTTTTTAGAATGGAGAGTACCCTTTGCTCCAAAATGGGGAGGCTTATCACAAT
JMFS050G04+           TGAAGACCTTTTTAGAATGGAGAGTACCCTTTGCTCCAAAATGGGGAGGCTTATAACAAT
JMFS160E09+           TGAAGACCTTTTTAGAATGGAGAGTACCCTTTGCTCCAAAATGGGGAGGCTTATCACAAT
                      ____________________________________________________________
consensus             TGAAGACCTTTTTAGAATGGAGAGTACCCTTTGCTCCAAAATGGGGAGGCTTATCACAAT
 
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JMFS073G05+           TCACAAACTGGCAATTAAGGGCTTGGAGTAGTTCAAAGAAAAGCAGAGAAATTTGAGGAG
JMFS050G04+           TCACAAACTGGCAATTAAGGGCTTGGAGTAGTTCAAAGAAAAGCAGAGAAATTTGAGGAG
JMFS160E09+           TCACAAACTGGCAATTAAGGGCTTGGAGTAGTTCAAAGAAAAGCAGAGAAATTTGAGGAG
                      ____________________________________________________________
consensus             TCACAAACTGGCAATTAAGGGCTTGGAGTAGTTCAAAGAAAAGCAGAGAAATTTGAGGAG
 
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JMFS073G05+           GGAAGGAAAGTGAAGAAAGC                                        
JMFS050G04+           GGAAGGAAAGTGAAGAAAGCTCGTGTCTTTCTAGTGGTGAAAAGAGAGCAGTAAAGGCAG
JMFS160E09+           GGAAGGAAAGTGAAGAAAGCTCGTGTCTTTCTAGTGGTGAAAAGAGAGCAGTAAAGGCAG
                      ____________________________________________________________
consensus             GGAAGGAAAGTGAAGAAAGCTCGTGTCTTTCTAGTGGTGAAAAGAGAGCAGTAAAGGCAG
 
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JMFS050G04+           CAATTGTATATTATCACGGGATAGTGACGGCGAGCGATGACTCGTTGGACA         
JMFS160E09+           CAATTGTATATTATCACGGGATAGTGACGGCGAGCGATGACTCGTTGGACAGCCCACTCC
                      ____________________________________________________________
consensus             CAATTGTATATTATCACGGGATAGTGACGGCGAGCGATGACTCGTTGGACAGCCCACTCC
 
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JMFS160E09+           GGTGATCGGTGGCCGGAAAATTCAAGGGTTGATACTTGATACTACTTCACTGCTCTACTT
                      ____________________________________________________________
consensus             GGTGATCGGTGGCCGGAAAATTCAAGGGTTGATACTTGATACTACTTCACTGCTCTACTT
 
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JMFS160E09+           CACTTGTCCTTGATAAATCAAGCCTGGAAAATTGTGGAATTAGGTCAATAGTATAGTTAG
                      ____________________________________________________________
consensus             CACTTGTCCTTGATAAATCAAGCCTGGAAAATTGTGGAATTAGGTCAATAGTATAGTTAG