Contig 000518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047N16Sequence611000518 (3)gb|ACN25198.1|3e-18unknown [Zea mays] gb|AFW60363.1| patatin T5 [Zea mays]544000518 (3)ref|XP_006829694.1|2e-19hypothetical protein AMTR_s00126p00050070 [Amborella trichopoda] gb|ERM97110.1|
JMFS149F01Sequence176000518 (3)

Alignment

This contig is upended


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JMFF047N16-                                     ACATTAAAGAAACCAACAAAAATCTTTATCATTT
                      ____________________________________________________________
consensus                                       ACATTAAAGAAACCAACAAAAATCTTTATCATTT
 
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JMFF047N16-           CTCTTGATAACATTTTTTTTCTATATCATACCAATCCTTTGAAATGGGAAACACCCAGAC
                      ____________________________________________________________
consensus             CTCTTGATAACATTTTTTTTCTATATCATACCAATCCTTTGAAATGGGAAACACCCAGAC
 
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JMFF047N16-           AACCCCATCAGCCCCATCCTCCGCCGCCAATCCCGCCACCGGAGAGTACAATGCTGCGTC
                      ____________________________________________________________
consensus             AACCCCATCAGCCCCATCCTCCGCCGCCAATCCCGCCACCGGAGAGTACAATGCTGCGTC
 
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JMFF047N16-           CATCCCTCCCGGCGGCGTTATCACCATCCTTAGCATTGACGGAGGTGGCATCCGTGGCAT
rJMFF047N16+                                                                  GCAT
                      ____________________________________________________________
consensus             CATCCCTCCCGGCGGCGTTATCACCATCCTTAGCATTGACGGAGGTGGCATCCGTGGCAT
 
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JMFF047N16-           CATCCCCGGCACCATTGTCGCTTACCTTGAAGAGGAGCTTCAAGCTTTGGACGGTCCGGA
rJMFF047N16+          CATCCCCGGCACCATTGTCGCTTACCTTGAAGAGGAGCTTCAAGCTTTGGACGGTCCGGA
                      ____________________________________________________________
consensus             CATCCCCGGCACCATTGTCGCTTACCTTGAAGAGGAGCTTCAAGCTTTGGACGGTCCGGA
 
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JMFF047N16-           TGCAAGAGCAGCGGACTACTTCGATGTGATTGCCGGAACGAGCACCGGAGGGCTGATGAC
rJMFF047N16+          TGCAAGAGCAGCGGACTACTTCGATGTGATTGCCGGAACGAGCACCGGAGGGCTGATGAC
                      ____________________________________________________________
consensus             TGCAAGAGCAGCGGACTACTTCGATGTGATTGCCGGAACGAGCACCGGAGGGCTGATGAC
 
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JMFF047N16-           CACCATGTTATCGGCGCCGGACAAGAACAAGCGCCCCCTCTACGCCGGCAAGGATATTGT
rJMFF047N16+          CACCATGTTATCGGCGCCGGACAAGAACAAGCGCCCCCTCTACGCCGGCAAGGATATTGT
                      ____________________________________________________________
consensus             CACCATGTTATCGGCGCCGGACAAGAACAAGCGCCCCCTCTACGCCGGCAAGGATATTGT
 
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JMFF047N16-           CCCTTTCTACAAGGAGCACGGACCAAAGAATGAACCGGTCCCCAAAGCTGGAACAAACAA
rJMFF047N16+          CCCTTTCTACAAGGAGCACGGACCAAAGAATGAACCGGTCCCCAAAGCTGGAACAAACAA
                      ____________________________________________________________
consensus             CCCTTTCTACAAGGAGCACGGACCAAAGAATGAACCGGTCCCCAAAGCTGGAACAAACAA
 
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JMFF047N16-           AGATGCTCTGAAAAGGTTGGCCGGTTTGCTGTCGGAGGAGAGGAGGCGCCGTACAATCGC
rJMFF047N16+          AGATGCTCTGAAAAGGTTGGCCGGTTTGCTGTCGGAGGAGAGGAGGCGCCGTACAATCGC
                      ____________________________________________________________
consensus             AGATGCTCTGAAAAGGTTGGCCGGTTTGCTGTCGGAGGAGAGGAGGCGCCGTACAATCGC
 
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JMFF047N16-           GGCACTTAACGGCGGCAAGTAGTTAAGTTACGGTGTTGATCAACATTGAGATCATATGTA
rJMFF047N16+          GGCACTTAACGGCGGCAAGTAGTTAAGTTACGGTGTTGATCAACATTGAGATCATATGTA
                      ____________________________________________________________
consensus             GGCACTTAACGGCGGCAAGTAGTTAAGTTACGGTGTTGATCAACATTGAGATCATATGTA
 
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JMFF047N16-           TCGTGTGTCTTTAATTTCTGCTACTTGAATTATTGAA                       
rJMFF047N16+          TCGTGTGTCTTTAATTTCTGCTACTTGAATTATTGAATAAGGCACATATCCTTCGACATG
JMFS149F01+               GTGTCTTTAATTTCTGCTACTTGAATTATTGAATAAGGCACATATCCTTCGACATG
                      ____________________________________________________________
consensus             TCGTGTGTCTTTAATTTCTGCTACTTGAATTATTGAATAAGGCACATATCCTTCGACATG
 
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rJMFF047N16+          AAAAAGGTTGTGCCATTGGGATTGGTTACATATGTATGCTTGTGTATTTTGTATAAACTA
JMFS149F01+           AAAAAGGTTGTGCCATTGGGATTGGTTACATATGTATGCTTGTGTATTTTGTATAAACTA
                      ____________________________________________________________
consensus             AAAAAGGTTGTGCCATTGGGATTGGTTACATATGTATGCTTGTGTATTTTGTATAAACTA
 
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rJMFF047N16+          GTAAGTGTCCCGTGCTATGTATGGACTATTATTAATGTAATAAATGATTAAATTATGT  
JMFS149F01+           GTAAGTGTCCCGTGCTATGTATGGACTATTATTAATGTAATAAATGATTAAATTATGTCC
                      ____________________________________________________________
consensus             GTAAGTGTCCCGTGCTATGTATGGACTATTATTAATGTAATAAATGATTAAATTATGTCC