Contig 000514:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS130H04Sequence622000514 (4)ref|XP_009790867.1|2e-126PREDICTED: protein transport protein Sec31A-like [Nicotiana sylvestris]
JMFS144H12Sequence611000514 (4)ref|XP_009602385.1|2e-127PREDICTED: protein transport protein Sec31A [Nicotiana tomentosiformis]
JMFS152F05Sequence623000514 (4)ref|XP_009602385.1|3e-104PREDICTED: protein transport protein Sec31A [Nicotiana tomentosiformis]
JMSF032A22Sequence677000514 (4)ref|XP_006438926.1|1e-90hypothetical protein CICLE_v10030570mg [Citrus clementina] gb|ESR52166.1| hypoth682010001 (4)gb|KDO83288.1|9e-66hypothetical protein CISIN_1g0464512mg, partial [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+                                                              TTCCCAGAG
                      ____________________________________________________________
consensus                                                                TTCCCAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           GTTGACACAGGAGTTTCAGTTTTCGGACTGGGAAGATTGTTAAAGAAATCTTCTCCATTA
                      ____________________________________________________________
consensus             GTTGACACAGGAGTTTCAGTTTTCGGACTGGGAAGATTGTTAAAGAAATCTTCTCCATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           TCAAATGGTAGCCCTGTGGTTTCTTTCTTCATGGTATTTTGTTCTGTACTTGTAACACTT
                      ____________________________________________________________
consensus             TCAAATGGTAGCCCTGTGGTTTCTTTCTTCATGGTATTTTGTTCTGTACTTGTAACACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           TCACCTAGGCCAAGAGCAGATACTTGATCAGAAATATCATCCTGCTTGGCAACTTTTTCT
                      ____________________________________________________________
consensus             TCACCTAGGCCAAGAGCAGATACTTGATCAGAAATATCATCCTGCTTGGCAACTTTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           TCTACAGGCAGACTGAAACCAAGGTGTGAAAGCAATTTTGTCCTTGCAGCTCCATCCTCT
                      ____________________________________________________________
consensus             TCTACAGGCAGACTGAAACCAAGGTGTGAAAGCAATTTTGTCCTTGCAGCTCCATCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           TCAAACATAACCTTCAGAAAACCCCATGTCTCCCTTTCATCATTAGATTCTAAATCTTGG
JMFS152F05+                                                                    TGG
                      ____________________________________________________________
consensus             TCAAACATAACCTTCAGAAAACCCCATGTCTCCCTTTCATCATTAGATTCTAAATCTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           GATTTCTTGTCACACAGAAGCCTGAGTTGGGATCTCTCCCCATCCTGGATCATAGTCTCA
JMFS152F05+           GATTTCTTGTCACACAGAAGCCTGAGTTGGGATCTCTCCCCATCCTGGATCATAGTCTCA
                      ____________________________________________________________
consensus             GATTTCTTGTCACACAGAAGCCTGAGTTGGGATCTCTCCCCATCCTGGATCATAGTCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           AAATCGGAAGAACGACTGACTAAACCATGTTCAGTAACCACAGTACGCACATAGACCTCT
JMFS152F05+           AAATCGGAAGAACGACTGACTAAACCATGTTCAGTAACCACAGTACGCACATAGACCTCT
                      ____________________________________________________________
consensus             AAATCGGAAGAACGACTGACTAAACCATGTTCAGTAACCACAGTACGCACATAGACCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           GATGGTTTATCTGAGGCATTAGTGGAGTTAAATGAGACCAGCTTCCCTCCAAAACCAAAT
JMFS152F05+           GATGGTTTATCTGAGGCATTAGTGGAGTTAAATGAGACCAGCTTCCCTCCAAAACCAAAT
                      ____________________________________________________________
consensus             GATGGTTTATCTGAGGCATTAGTGGAGTTAAATGAGACCAGCTTCCCTCCAAAACCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           GACACTCCTCCTCCTCGTTTGTACCATTTTGGAGCTTTCAAAGAAGCTGCTCCAAAATTG
JMFS152F05+           GACACTCCTCCTCCTCGTTTGTACCATTTTGGAGCTTTCAAAGAAGCTGCTCCAAAATTG
JMFS130H04+                                  CCATTTTGGAGCTTTCAAAGAAGCTGCTCCAAAATTG
                      ____________________________________________________________
consensus             GACACTCCTCCTCCTCGTTTGTACCATTTTGGAGCTTTCAAAGAAGCTGCTCCAAAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           CCATCTTCACCAACATATCGATCACAACCCTCAATATTATAAATCCCAATCTTTCCATCA
JMFS152F05+           CCATCTTCACCAACATATCGATCACAACCCTCAATATTATAAATCCCAATCTTTCCATCA
JMFS130H04+           CCATCTTCACCAACATATCGATCACAACCCTCAATATTATAAATCCCAATCTTTCCATCA
JMFS144H12+                                                            TCTTTCCATCA
                      ____________________________________________________________
consensus             CCATCTTCACCAACATATCGATCACAACCCTCAATATTATAAATCCCAATCTTTCCATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           AATGAAGATGCTGATATGACACCCGGGCACTTGGGATACCAGTGTACATCAAAATTCCAA
JMFS152F05+           AATGAAGATGCTGATATGACACCCGGGCACTTGGGATACCAGTGTACATCAAAATTCCAA
JMFS130H04+           AATGAAGATGCTGATATGACACCCGGGCACTTGGGATACCAGTGTACATCAAAATTCCAA
JMFS144H12+           AATGAAGATGCTGATATGACACCCGGGCACTTGGGATACCAGTGTACATCAAAATTCCAA
                      ____________________________________________________________
consensus             AATGAAGATGCTGATATGACACCCGGGCACTTGGGATACCAGTGTACATCAAAATTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A22+           TTAGT                                                       
JMFS152F05+           TTAGTTCCTGATGGCAATTCAGAGACAATCTCTCCTGATACAACATCCCAGCATATAGTG
JMFS130H04+           TTAGTTCCTGATGGCAATTCAGAGACAATCTCTCCTGATACAACATCCCAGCATATAGTG
JMFS144H12+           TTAGTTCCTGATGGCAATTCAGAGACAATCTCTCCTGATACAACATCCCAGCATATAGTG
                      ____________________________________________________________
consensus             TTAGTTCCTGATGGCAATTCAGAGACAATCTCTCCTGATACAACATCCCAGCATATAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS152F05+           CGGTTATCTTTTGCACAAGTAAGTAGGTAGGAACTGTCAATGGGACACCAGGACATTGCA
JMFS130H04+           CGGTTATCTTTTGCACAAGTAAGTAGGTAGGAACTGTCAATGGGACACCAGGACATTGCA
JMFS144H12+           CGGTTATCTTTTGCACAAGTAAGTAGGTAGGAACTGTCAATGGGACACCAGGACATTGCA
                      ____________________________________________________________
consensus             CGGTTATCTTTTGCACAAGTAAGTAGGTAGGAACTGTCAATGGGACACCAGGACATTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS152F05+           ATGACACCCTTAGTATGCCCCACAAACTCTTTCACTGGAGACATTACATTCCGCATATCC
JMFS130H04+           ATGACACCCTTAGTATGCCCCACAAACTCTTTCACTGGAGACATTACATTCCGCATATCC
JMFS144H12+           ATGACACCCTTAGTATGCCCCACAAACTCTTTCACTGGAGACATTACATTCCGCATATCC
                      ____________________________________________________________
consensus             ATGACACCCTTAGTATGCCCCACAAACTCTTTCACTGGAGACATTACATTCCGCATATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS152F05+           CACATCATGAGTGCAGGTGAACCATCTTCATCAGATGATACAATAAGCTGAGTGGCAAAA
JMFS130H04+           CACATCATGAGTGCAGGTGAACCATCTTCATCAGATGATACAATAAGCTGAGTGGCAAAA
JMFS144H12+           CACATCATGAGTGCAGGTGAACCATCTTCATCAGATGATACAATAAGCTGAGTGGCAAAA
                      ____________________________________________________________
consensus             CACATCATGAGTGCAGGTGAACCATCTTCATCAGATGATACAATAAGCTGAGTGGCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS152F05+           TCAGGATGCCACTGCAAAAC                                        
JMFS130H04+           TCAGGATGCCACTGCAAAACAGAACAGCGCCTTCTAATGGAATCTGAGAAACTTATGACT
JMFS144H12+           TCAGGATGCCACTGCAAAAAAGAACAGCGCCTTCTAATGGAATCTGAGAAACTTATGACT
                      ____________________________________________________________
consensus             TCAGGATGCCACTGCAAAACAGAACAGCGCCTTCTAATGGAATCTGAGAAACTTATGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS130H04+           GGCTTTTGCTTCCTAAGATCCCAAACCACAGTTGTTCCATTCAGTGATGTGGATGCCAAT
JMFS144H12+           GGCTTTTGCTTCCTAAGATCCCAAACCACAGTTGTTCCATTCAGTGATGTGGATGCCAAT
                      ____________________________________________________________
consensus             GGCTTTTGCTTCCTAAGATCCCAAACCACAGTTGTTCCATTCAGTGATGTGGATGCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS130H04+           ACATGCTGAACCTTGCTGTTCCAGGATACATATGAAATTTCACTTTGGGCTGATGATCCA
JMFS144H12+           ACATGCTGAACCTTGCTGTTCCAGGATACATATGAAATTTCACTTTGGGCTGATGATCCA
                      ____________________________________________________________
consensus             ACATGCTGAACCTTGCTGTTCCAGGATACATATGAAATTTCACTTTGGGCTGATGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS130H04+           CTACCCTTCAGAGGAGGATAATGGGTAGGTTCT                           
JMFS144H12+           CTACCCTTCAGAGGAGGATAATGGGTAGGTTCTACCGGATTTGCAATATCCCATATGCAA
                      ____________________________________________________________
consensus             CTACCCTTCAGAGGAGGATAATGGGTAGGTTCTACCGGATTTGCAATATCCCATATGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS144H12+           ATTTTGCCTTCATCAGCACCAGAAGCAAGGAGATTTGAAGTAAATACATTAAACTCCAAA
                      ____________________________________________________________
consensus             ATTTTGCCTTCATCAGCACCAGAAGCAAGGAGATTTGAAGTAAATACATTAAACTCCAAA