Contig 000507:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS012A04Sequence272000507 (3)ref|XP_006343600.1|3e-39PREDICTED: myosin-2 heavy chain-like [Solanum tuberosum]
JMFS017H06Sequence627000507 (3)ref|XP_009800573.1|174PREDICTED: uncharacterized protein LOC104246462 [Nicotiana sylvestris]
JMFS135F01Sequence652000507 (3)ref|XP_006343600.1|1e-44PREDICTED: myosin-2 heavy chain-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS017H06+                                                                    GCA
                      ____________________________________________________________
consensus                                                                      GCA
 
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JMFS012A04+                   TCAGGAATGTCGATTTTCTCGACTTGCTCGGGGGCTGGAGGTGGTGCATTGC
JMFS017H06+           ACGGGGGATCAGGAATGTCGATTTTCTCGACTTGCTCGGGGGCTGNAGGTGGTGCATTGC
JMFS135F01+                   TCAGGAATGTCGATTTTCTCGACTTGCTCGGGGGCTGGAGGTGGTGCATTGC
                      ____________________________________________________________
consensus             ACGGGGGATCAGGAATGTCGATTTTCTCGACTTGCTCGGGGGCTGGAGGTGGTGCATTGC
 
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JMFS012A04+           TCCGCATTCTTGATTTGTTGAACAAGAACACTTCTTGATCGTCCGATGGGAGCTTGTAAG
JMFS017H06+           TCCGCATTCTTGATTTGTTGAACAAGAACACTTCTTGATCGTCCGATGGGAGCTTGTAAG
JMFS135F01+           TCCGCATTCTTGATTTGTTGAACAAGAACACTTCTTGATCGTCCGATGGGAGCTTGTAAG
                      ____________________________________________________________
consensus             TCCGCATTCTTGATTTGTTGAACAAGAACACTTCTTGATCGTCCGATGGGAGCTTGTAAG
 
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JMFS012A04+           TCGAGAGGGGGCACCGAGGCTCCAGTTTCACATCCTGGCACAAGAGAAGATGATCATTCG
JMFS017H06+           TCGAGAGGGGGCACCGAGGCTCCAGTTTCACATCCTGGCACAAGAGAAGATGATCATTCG
JMFS135F01+           TCGAGAGGGGGCACCGAGGCTCCAGTTTCACATCCTGGCACAAGAGAAGATGATCATTCG
                      ____________________________________________________________
consensus             TCGAGAGGGGGCACCGAGGCTCCAGTTTCACATCCTGGCACAAGAGAAGATGATCATTCG
 
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JMFS012A04+           AGGGAATCCCGCTCACCGATTCCAGGTATTCCTGCACGTTTTCAACGAGCGTATATCCAT
JMFS017H06+           AGGGAATCCCGCTCACCGATTCCAGGTATTCCTGCACGTTTTCAACGAGCGTATATCCAT
JMFS135F01+           AGGGAATCCCGCTCACCGATTCCAGGTATTCCTGCACGTTTTCAACGAGCGTATATCCAT
                      ____________________________________________________________
consensus             AGGGAATCCCGCTCACCGATTCCAGGTATTCCTGCACGTTTTCAACGAGCGTATATCCAT
 
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JMFS012A04+           TGCAACTGAGCTCAAACGATTGCCCGTTCTCGGC                          
JMFS017H06+           TGCAACTGAGCTCAAACGATTGCCCGTTCTCGGCAATGTGAACTAAGAGCTTCCCATTTT
JMFS135F01+           TGCAACTGAGCTCAAACGATTGCCCGTTCTCGGCAATGTGAACTAAGAGCTTCCCATTTT
                      ____________________________________________________________
consensus             TGCAACTGAGCTCAAACGATTGCCCGTTCTCGGCAATGTGAACTAAGAGCTTCCCATTTT
 
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JMFS017H06+           GAACTGCACCAGACAACACATTTGAACTCATCTTCTCCCCCAATTCCACAACTCCTCACC
JMFS135F01+           GAACTGCACCAGACAACACATTTGAACTCATCTTCTCCCCCAATTCCACAACTCCTCACC
                      ____________________________________________________________
consensus             GAACTGCACCAGACAACACATTTGAACTCATCTTCTCCCCCAATTCCACAACTCCTCACC
 
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JMFS017H06+           AAATAAACAATTATCAAACCACCTTAAACTCTTGCCACGCCGCAATCTCCAGCCTTGTGA
JMFS135F01+           AAATAAACAATTATCAAACCACCTTAAACTCTTGCCACGCCGCAATCTCCAGCCTTGTGA
                      ____________________________________________________________
consensus             AAATAAACAATTATCAAACCACCTTAAACTCTTGCCACGCCGCAATCTCCAGCCTTGTGA
 
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JMFS017H06+           TTAGGTCAATATTCTCTATGTATCTGATGATGGGTCTGCGTTTTCTTGTTTTCTGGAGCT
JMFS135F01+           TTAGGTCAATATTCTCTATGTATCTGATGATGGGTCTGCGTTTTCTTGTTTTCTGGAGCT
                      ____________________________________________________________
consensus             TTAGGTCAATATTCTCTATGTATCTGATGATGGGTCTGCGTTTTCTTGTTTTCTGGAGCT
 
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JMFS017H06+           GAATAATACTCTTTTGTTCCCTTCCTTTTCCTCTCCTTTCTTCCCCTTCTTCTCGCTATT
JMFS135F01+           GAATAATACTCTTTTGTTCCCTTCCTTTTCCTCTCCTTTCTTCCCCTTCTTCTCGCTATT
                      ____________________________________________________________
consensus             GAATAATACTCTTTTGTTCCCTTCCTTTTCCTCTCCTTTCTTCCCCTTCTTCTCGCTATT
 
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JMFS017H06+           TATCAGAGAAAAGGGTCCTTGTGAAAGAAGCAACCAACAGGGGTCAAGGAAGGATTTTCG
JMFS135F01+           TATCAGAGAAAAGGGTCCTTGTGAAAGAAGCAACCAACAGGGGTCAAGGAAGGATTTTCG
                      ____________________________________________________________
consensus             TATCAGAGAAAAGGGTCCTTGTGAAAGAAGCAACCAACAGGGGTCAAGGAAGGATTTTCG
 
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JMFS017H06+           CAGTGGTCTTTTTCCCAGTTCCTC                                    
JMFS135F01+           CAGTGGTCTTTTTCCCAGTTCCTCCACAATTTCATAAAAGAGAAAGAGCCTCGTGCCGAA
                      ____________________________________________________________
consensus             CAGTGGTCTTTTTCCCAGTTCCTCCACAATTTCATAAAAGAGAAAGAGCCTCGTGCCGAA