Contig 000500:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014B15Sequence505000500 (3)gb|AAC23542.1|4e-78receptor protein kinase [Ipomoea trifida]625006129 (3)gb|AAC23542.1|3e-78receptor protein kinase [Ipomoea trifida]
JMFS096D10Sequence608000500 (3)gb|AAC23542.1|1e-125receptor protein kinase [Ipomoea trifida]
JMFS128E12Sequence591000500 (3)gb|AAC23542.1|1e-97receptor protein kinase [Ipomoea trifida]

Alignment

This contig is upended


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JMFS096D10+             ATCTCCGGGAAGCCATTGATGTCCATCTTGAAGCTGGTAGACCCCTCACCCGGATCAT
                      ____________________________________________________________
consensus               ATCTCCGGGAAGCCATTGATGTCCATCTTGAAGCTGGTAGACCCCTCACCCGGATCAT
 
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JMFS096D10+           TTAAGCTTTTCCATGCCGAGATGTAGCGGTTCAACCCGGTTCTCGAATCCCATCCGAGTT
                      ____________________________________________________________
consensus             TTAAGCTTTTCCATGCCGAGATGTAGCGGTTCAACCCGGTTCTCGAATCCCATCCGAGTT
 
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JMFS096D10+           TCATACCCGGCAGCAATGTGTCCGTCGGGTAGTCAAAGCTCTGCCACAGATAATTCTCCG
JMFS128E12+                    GCAGCAATGTGTCGTACGGGTAGTCAAAGCTCTGCCACAGATAATTCTCCG
                      ____________________________________________________________
consensus             TCATACCCGGCAGCAATGTGTCGTTCGGGTAGTCAAAGCTCTGCCACAGATAATTCTCCG
 
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JMFS096D10+           GATTCTCATCGTCTTCTCGCCGGAGAACGAAGTTCCCGGAATCCAGGAGCTGCGCCACGG
JMFF014B15+                                       GAAGTTCCCGGAATCCAGGAGCTGCGCCACGG
JMFS128E12+           GATTCTCATCGTCTTCTCGCCGGAGAACGAAGTTCCCGGAATCCAGGAGCTGCGCCACGG
                      ____________________________________________________________
consensus             GATTCTCATCGTCTTCTCGCCGGAGAACGAAGTTCCCGGAATCCAGGAGCTGCGCCACGG
 
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JMFS096D10+           TGTTCTTCGCCGCCGATTGATTCGAAGGCGACCATATAAAATTCCCACCCCCGTCGACCA
JMFF014B15+           TGTTCTTCGCCGCCGATTGATTCGAAGGCGACCATATAAAATTCCCACCCCCGTCGACCA
JMFS128E12+           TGTTCTTCGCCGCCGATTGATTCGAAGGCGACCATATAAAATTCCCACCCCCGTCGACCA
                      ____________________________________________________________
consensus             TGTTCTTCGCCGCCGATTGATTCGAAGGCGACCATATAAAATTCCCACCCCCGTCGACCA
 
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JMFS096D10+           GATGGATGTTCCCATCTTCGCCGATTTTCAAGATTCCGGCGGAACCGGTGAGAGGCGCGT
JMFF014B15+           GATGGATGTTCCCATCTTCGCCGATTTTCAAGATTCCGGCGGAACCGGTGAGAGGCGCGT
JMFS128E12+           GATGGATGTTCCCATCTTCGCCGATTTTCAAGATTCCGGCGGAACCGGTGAGAGGCGCGT
                      ____________________________________________________________
consensus             GATGGATGTTCCCATCTTCGCCGATTTTCAAGATTCCGGCGGAACCGGTGAGAGGCGCGT
 
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JMFS096D10+           CTCTGTTACCCACCCAGACTACCGTCCTGGCTTCAATTTCCTTGTACCATATCCCCACGT
JMFF014B15+           CTCTGTTACCCACCCAGACTACCGTCCTGGCTTCAATTTCCTTGTACCATATCCCCACGT
JMFS128E12+           CTCTGTTACCCACCCAGACTACCGTCCTGGCTTCAATTTCCTTGTACCATATCCCCACGT
                      ____________________________________________________________
consensus             CTCTGTTACCCACCCAGACTACCGTCCTGGCTTCAATTTCCTTGTACCATATCCCCACGT
 
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JMFS096D10+           AACTTTTACCGGAGCCGTTGGGAGTGAAAAACCCCAATTCGAAGAGCCCATCGGAAGACA
JMFF014B15+           AACTTTTACCGGAGCCGTTGGGAGTGAAAAACCCCAATTCGAAGAGCCCATCGGAAGACA
JMFS128E12+           AACTTTTACCGGAGCCGTTGGGAGTGAAAAACCCCAATTCGAAGAGCCCATCGGAAGACA
                      ____________________________________________________________
consensus             AACTTTTACCGGAGCCGTTGGGAGTGAAAAACCCCAATTCGAAGAGCCCATCGGAAGACA
 
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JMFS096D10+           CCAAGGTTCGGTTGCCGGCGAGTGGCTGCGTCGGAGTGATGGAGTCAACGGCGAGAGCCA
JMFF014B15+           CCAAGGTTCGGTTGCCGGCGAGTGGCTGCGTCGGAGTGATGGAGTCAACGGCGAGAGCCA
JMFS128E12+           CCAAGGTTCGGTTGCCGGCGAGTGGCTGCGTCGGAGTGATGGAGTCAACGGCGAGAGCCA
                      ____________________________________________________________
consensus             CCAAGGTTCGGTTGCCGGCGAGTGGCTGCGTCGGAGTGATGGAGTCAACGGCGAGAGCCA
 
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JMFS096D10+           CGGCGAGATTTCCGATAAAAATTTGGGAAATCAGAAAGCACCAGAGTGGGTAACGGTGAT
JMFF014B15+           CGGCGAGATTTCCGATAAAAATTTGGGAAATCAGAAAGCACCAGAGTGGGTAACGGTGAT
JMFS128E12+           CGGCGAGATTTCCGATAAAAATTTGGGAAATCAGAAAGCACCAGAGTGGGTAACGGTGAT
                      ____________________________________________________________
consensus             CGGCGAGATTTCCGATAAAAATTTGGGAAATCAGAAAGCACCAGAGTGGGTAACGGTGAT
 
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JMFS096D10+           CCTCGCCGGC                                                  
JMFF014B15+           CCTCGCCGGCGTTTCTCATTCTCGAGAGTTGATTAGTAGTGACCAAATTCCTTTTTTGTA
JMFS128E12+           CCTCGCCGGCGTTTCTCATTCTCGAGAGTTGATTAGTAGTGACCAAATTCCTTTTTTGTA
                      ____________________________________________________________
consensus             CCTCGCCGGCGTTTCTCATTCTCGAGAGTTGATTAGTAGTGACCAAATTCCTTTTTTGTA
 
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JMFF014B15+           TCCGAAAAGGGCCGAAAGTTAGGCCCTTTGGAATTGTTTGGTATGACGAT          
JMFS128E12+           TCCGAAAAGGGCCGAAAGTTAGGCCCTTTGGAATTGTTTGGTATGACGATAGAAAGGAGG
                      ____________________________________________________________
consensus             TCCGAAAAGGGCCGAAAGTTAGGCCCTTTGGAATTGTTTGGTATGACGATAGAAAGGAGG