Contig 000499:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037H21Sequence570011898 (11)ref|XP_009757162.1|4e-49PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720735000499 (4)ref|XP_009620317.1|8e-132PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720
JMFS110C08Sequence618000499 (4)ref|XP_011468680.1|8e-84PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720
JMFS128B01Sequence348000499 (4)ref|XP_011094724.1|1e-13PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720
JMSF010K13Sequence400011898 (11)ref|XP_006361768.1|1e-14PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720763000499 (4)ref|XP_009757162.1|1e-125PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720

Alignment

This contig is upended


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rJMFF037H21+                                     GTACCTTCATACTGGATGCGTCCCGTCCATCAT
rJMSF010K13+                                                       CGTCCCGTCCATCAT
                      ____________________________________________________________
consensus                                        GTACCTTCATACTGGATGCGTCCCGTCCATCAT
 
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rJMFF037H21+          CCACAGAGATCTGAAAACCAGCAATATTNTTCTTGACACGAACATGAGAGCAAAAGTTTC
rJMSF010K13+          CCACAGAGATCTGAAAACCAGCAATATTCTTCTTGACACGAACATGAGAGCAAAAGTTTC
                      ____________________________________________________________
consensus             CCACAGAGATCTGAAAACCAGCAATATTCTTCTTGACACGAACATGAGAGCAAAAGTTTC
 
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rJMFF037H21+          GGATTTTGGTCTCTCGAAGATTGCAGTAGATGGTAATTCTCACGTTTCGAGCATAGTCCG
rJMSF010K13+          GGATTTTGGTCTCTCGAAGATTGCAGTAGATGGTAATTCTCACGTTTCGAGCATAGTCCG
                      ____________________________________________________________
consensus             GGATTTTGGTCTCTCGAAGATTGCAGTAGATGGTAATTCTCACGTTTCGAGCATAGTCCG
 
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rJMFF037H21+          GGGAACTGTAGGGTACCTGGATCCCGAGTACTATATATCGCAGCAGTTGACAGACAAAAG
rJMSF010K13+          GGGAACTGTAGGGTACCTGGATGCCGAGTACTATATATCGCAGCAGTTGACAGACAAAAG
JMFS110C08+                                                              AGACAAAAG
                      ____________________________________________________________
consensus             GGGAACTGTAGGGTACCTGGATGCCGAGTACTATATATCGCAGCAGTTGACAGACAAAAG
 
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rJMFF037H21+          CGACGTCTACAGTTTCGGAGTCATTCTCCTGGAGCTAATATCCGGTCAAGAAGCGATCTC
rJMSF010K13+          CGACGTCTACAGTTTCGGAGTCATTCTCCTGGAGCTAATATCCGGTCAAGAAGCGATCTC
JMFS110C08+           CGACGTCTACAGTTTCGGAGTCATTCTCCTGGAGCTAATATCCGGTCAAGAAGCGATCTC
                      ____________________________________________________________
consensus             CGACGTCTACAGTTTCGGAGTCATTCTCCTGGAGCTAATATCCGGTCAAGAAGCGATCTC
 
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rJMFF037H21+          CAACGAGAAGTTCGGTGTTAACTGCCGCAACATAGTCCAATGGGCAAAACTGCACATCGA
rJMSF010K13+          CAACGAGAAGTTCGGTGTTAACTGCCGCAACATAGTCCAATGGGCAAAACTGCACATCGA
JMFS110C08+           CAACGAGAAGTTCGGTGTTAACTGCCGCAACATAGTCCAATGGGCAAAACTGCACATCGA
                      ____________________________________________________________
consensus             CAACGAGAAGTTCGGTGTTAACTGCCGCAACATAGTCCAATGGGCAAAACTGCACATCGA
 
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rJMFF037H21+          GAGCGGGGATATTCAAGGCATCATCGACCCCGCCCTGCGAAACGAGTACGACATCCAATC
rJMSF010K13+          GAGCGGGGATATTCAAGGCATCATCGACCCCGCCCTGCGAAACGAGTACGACATCCAATC
JMFS110C08+           GAGCGGGGATATTCAAGGCATCATCGACCCCGCCCTGCGAAACGAGTACGACATCCAATC
                      ____________________________________________________________
consensus             GAGCGGGGATATTCAAGGCATCATCGACCCCGCCCTGCGAAACGAGTACGACATCCAATC
 
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rJMFF037H21+          CATGTGGAAGATAGCCGAGAAAGCCTTGATGTGCGTGCAGCCCCACGGGAGCATGAGGCC
rJMSF010K13+          CATGTGGAAGATAGCCGAGAAAGCCTTGATGTGCGTGCAGCCCCACGGGAGCATGAGGCC
JMFS110C08+           CATGTGGAAGATAGCCGAGAAAGCCTTGATGTGCGTGCAGCCCCACGGGAGCATGAGGCC
                      ____________________________________________________________
consensus             CATGTGGAAGATAGCCGAGAAAGCCTTGATGTGCGTGCAGCCCCACGGGAGCATGAGGCC
 
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rJMFF037H21+          CTCCATCTCGGAAGTTATCAAGGAAATCCAGGACGCCCTCGCCATTGAACGAGGAGCAGA
rJMSF010K13+          CTCCATCTCGGAAGTTATCAAGGAAATCCAGGACGCCCTCGCCATTGAACGAGGAGCAGA
JMFS110C08+           CTCCATCTCGGAAGTTATCAAGGAAATCCAGGACGCCCTCGCCATTGAACGAGGAGCAGA
                      ____________________________________________________________
consensus             CTCCATCTCGGAAGTTATCAAGGAAATCCAGGACGCCCTCGCCATTGAACGAGGAGCAGA
 
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rJMFF037H21+          AGTGGTAAGGGAAGGGAGTTCGGATGATATATCTAAGCATTCTGTGCATTCATCCCTGAA
rJMSF010K13+          AGTGGTAAGGGAAGGGAGTTCGGATGATATATCTAAGCATTCTGTGCATTCATCCCTGAA
JMFS110C08+           AGTGGTAAGGGAAGGGAGTTCGGATGATATATCTAAGCATTCTGTGCATTCATCCCTGAA
JMFS128B01-                       AGGGAGTTCGGATGATATATCTAAGCATTCTGTGCATTCATCCCTGAA
                      ____________________________________________________________
consensus             AGTGGTAAGGGAAGGGAGTTCGGATGATATATCTAAGCATTCTGTGCATTCATCCCTGAA
 
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rJMFF037H21+          CCTGGGCTCCATTGATCTCGGCACGAGCGAGCATTACCTCTCCATCGATGACTCCATCGC
rJMSF010K13+          CCTGGGCTCCATTGATCTCGGCACGAGCGAGCATTACCTCTCCATCGATGACTCCATCGC
JMFS110C08+           CCTGGGCTCCATTGATCTCGGCACGAGCGAGCATTACCTCTCCATCGATGACTCCATCGC
JMFS128B01-           CCTGGGCTCCATTGATCTCGGCACGAGCGAGCATTACCTCTCCATCGATGACTCCATCGC
                      ____________________________________________________________
consensus             CCTGGGCTCCATTGATCTCGGCACGAGCGAGCATTACCTCTCCATCGATGACTCCATCGC
 
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rJMFF037H21+          TCGCCCAACTGCTCGTTAGATCTTTGTTTCGTATATATATCAATCAGTAGGTTGGATCTT
rJMSF010K13+          TCGCCCAACTGCTCGTTAGATCTTTGTTTCGTATATATATCAATCAGTAGGTTGGATCTT
JMFS110C08+           TCGCCCAACTGCTCGTTAGATCTTTGTTTCGTATATATATCAATCAGTAGGTTGGATCTT
JMFS128B01-           TCGCCCAACTGCTCGTTAGATCTTTGTTTCGTATATATATCAATCAGTAGGTTGGATCTT
                      ____________________________________________________________
consensus             TCGCCCAACTGCTCGTTAGATCTTTGTTTCGTATATATATCAATCAGTAGGTTGGATCTT
 
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rJMFF037H21+          GTTCATACATTGCTTTTCGGTTTCGGTTTCTTGATCTTT                     
rJMSF010K13+          GTTCATACATTGCTTTTCGGTTTCGGTTTCTTGATCTTTTGCATTCTTGCCCAATTCTTT
JMFS110C08+           GTTCATACATTGCTTTTCGGTTTCGGTTTCTTGATCTTTTGCATTCTTGCCCAATTCTTT
JMFS128B01-           GTTCATACATTGCTTTTCGGTTTCGGTTTCTTGATCTTTTGCATTCTTGCCCAATTCTTT
                      ____________________________________________________________
consensus             GTTCATACATTGCTTTTCGGTTTCGGTTTCTTGATCTTTTGCATTCTTGCCCAATTCTTT
 
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rJMSF010K13+          TTGCCTGCAAAT                                                
JMFS110C08+           TTGCCTGCAAATTAGCAGAATTGTTAATC                               
JMFS128B01-           TTGCCTGCAAATTAGCAGAATTGTTAATCCTTTTCTGAGTATATATTTGACTCCATTGTT
                      ____________________________________________________________
consensus             TTGCCTGCAAATTAGCAGAATTGTTAATCCTTTTCTGAGTATATATTTGACTCCATTGTT
 
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JMFS128B01-           ATGCTACTCTTCTCCCCGTCAAGCTAACATCTTACTTGACATGATGAGATTTTAATGGAG
                      ____________________________________________________________
consensus             ATGCTACTCTTCTCCCCGTCAAGCTAACATCTTACTTGACATGATGAGATTTTAATGGAG