Contig 000495:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS073E08Sequence627000495 (5)ref|XP_002870438.1|6e-96predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH46697.1| predicted pr
JMFS124A02Sequence563000495 (5)ref|XP_002870438.1|5e-106predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH46697.1| predicted pr
JMFS131D05Sequence626000495 (5)ref|XP_002870438.1|3e-105predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH46697.1| predicted pr
JMFS131E06Sequence620000495 (5)ref|XP_002870438.1|2e-119predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH46697.1| predicted pr
JMFS159G02Sequence547000495 (5)ref|XP_002870438.1|2e-111predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH46697.1| predicted pr

Alignment

This contig is upended


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JMFS159G02+                                                               TATCGGGA
                      ____________________________________________________________
consensus                                                                 TATCGGGA
 
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JMFS159G02+           TAAAGTACGCCATCAGTGTAAAGACAACTCGTCCAAGATATTCAAGATTCACCTGATGGA
JMFS131E06+                                                    TCAAGATTCACNTGATGGA
                      ____________________________________________________________
consensus             TAAAGTACGCCATCAGTGTAAAGACAACTCGTCCAAGATATTCAAGATTCACCTGATGGA
 
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JMFS159G02+           CAATTCCAGAGCCAGGGGGAACAACAAGCATGTTGTGGAAAGCATTAGAACCCCATTTAA
JMFS131D05+                                                 AAAGCATTAGAACCCCATTTAA
JMFS131E06+           CAATTCCAGAGCCAGGGGGAACAACAAGCATGTTGTGGAAAGCATTAGAACCCCATTTAA
JMFS124A02+                                                GAAAGCATTAGAACNCCATTTAA
                      ____________________________________________________________
consensus             CAATTCCAGAGCCAGGGGGAACAACAAGCATGTTGTGGAAAGCATTAGAACCCCATTTAA
 
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JMFS159G02+           GAAAGGCAAATCTCTCCTTGTTCCTCTGAAACTCAAGCTCCATATTTGCCTTAACAGCAT
JMFS131D05+           GAAAGGCAAATCTCTCCTTGTTCCTCTGGAACTCAAGCTCCATATTTGCCTTAACAGCAT
JMFS131E06+           GAAAGGCAAATCTCTCCTTGTTCCTCTGGAACTCAAGCTCCATATTTGCCTTAACAGCAT
JMFS073E08+                      CTCTCCTTGTTCCTCTGGAACTCAAGCTCCATATNTGCCTTAACAGCAT
JMFS124A02+           GAAAGGCAAATCTCTCCTTGTTCCTCTGGAACTCAAGCTCCATATTTGCCTTAACAGCAT
                      ____________________________________________________________
consensus             GAAAGGCAAATCTCTCCTTGTTCCTCTGGAACTCAAGCTCCATATTTGCCTTAACAGCAT
 
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JMFS159G02+           TTTCTGACCTTGCAACATCAACTTGAACAGAATGATCAATAACAAGATCCACTGGAACCA
JMFS131D05+           TTTCTGACCTTGCAACATCAACTTGAACAGAATGATCAATAACAAGATCCACTGGAACCA
JMFS131E06+           TTTCTGACCTTGCAACATCAACTTGAACAGAATGATCAATAACAAGATCCACTGGAACCA
JMFS073E08+           TTTCTGACCTTGCAACATCAACTTGAACAGAATGATCAATAACAAGATCCACTGGAACCA
JMFS124A02+           TTTCTGACCTTGCAACATCAACTTGAACAGAATGATCAATAACAAGATCCACTGGAACCA
                      ____________________________________________________________
consensus             TTTCTGACCTTGCAACATCAACTTGAACAGAATGATCAATAACAAGATCCACTGGAACCA
 
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JMFS159G02+           AGGGGTTGATCTTGTTAGAATCACTACCAAGCTTGTTCATGGCATCGCGCATGCAAGCAA
JMFS131D05+           AGGGGTTGATCTTGTTAGAATCACTACCAAGCTTGTTCATGGCATCGCGCATGCAAGCAA
JMFS131E06+           AGGGGTTGATCTTGTTAGAATCACTACCAAGCTTGTTCATGGCATCGCGCATGCAAGCAA
JMFS073E08+           AGGGGTTGATCTTGTTAGAATCACTACCAAGCTTGTTCATGGCATCGCGCATGCAAGCAA
JMFS124A02+           AGGGGTTGATCTTGTTAGAATCACTACCAAGCTTGTTCATGGCATCGCGCATGCAAGCAA
                      ____________________________________________________________
consensus             AGGGGTTGATCTTGTTAGAATCACTACCAAGCTTGTTCATGGCATCGCGCATGCAAGCAA
 
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JMFS159G02+           GATCTACAACTGCTGGGACACCAGTAAAGTCTTGTAATAAGACACGGGCAGGCTTCCAGG
JMFS131D05+           GATCTACAACTGCTGGGACACCAGTAAAGTCTTGTAATAAGACACGGGCAGGCTTGAAGG
JMFS131E06+           GATCTACAACTGCTGGGACACCAGTAAAGTCTTGTAATAAGACACGGGCAGGCTTGAAGG
JMFS073E08+           GATCTACAACTGCTGGGACACCAGTAAAGTCTTGTAATAAGACACGGGCAGGCTTGAAGG
JMFS124A02+           GATCTACAACTGCTGGGACACCAGTAAAGTCTTGTAATAAGACACGGGCAGGCTTGAAGG
                      ____________________________________________________________
consensus             GATCTACAACTGCTGGGACACCAGTAAAGTCTTGTAATAAGACACGGGCAGGCTTGAAGG
 
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JMFS159G02+           GTATCTCCACTAGCTTAGGAGCAGTGTTTTGCCAGTCAATAATCTTCTCAACATCTTCCT
JMFS131D05+           GTATCTCCACTAGCTTAGGAGCAGTGTTTTGCCAGTCAATAATCTTCTCAACATCTTCCT
JMFS131E06+           GTATCTCCACTAGCTTAGGAGCAGTGTTTTGCCAGTCAATAATCTTCTCAACATCTTCCT
JMFS073E08+           GTATCTCCACTAGCTTAGGAGCAGTGTTTTGCCAGTCAATAATCTTCTCAACATCTTCCT
JMFS124A02+           GTATCTCCACTAGCTTAGGAGCAGTGTTTTGCCAGTCAATAATCTTCTCAACATCTTCCT
                      ____________________________________________________________
consensus             GTATCTCCACTAGCTTAGGAGCAGTGTTTTGCCAGTCAATAATCTTCTCAACATCTTCCT
 
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JMFS159G02+           TGGTCACTTGAAAGTTGTCACAGTTGCGAATTGCGGCTTCAAGAAGGATTCTAATAGAGT
JMFS131D05+           TGGTCACTTGAAAGTTGTCACAGTTGCGAATTGCGGCTTCAAGAAGGATTCTAATAGAGT
JMFS131E06+           TGGTCACTTGAAAGTTGTCACAGTTGCGAATTGCGGCTTCAAGAAGGATTCTAATAGAGT
JMFS073E08+           TGGTCACTTGAAAGTTGTCACAGTTGCGAATTGCGGCTTCAAGAAGGATTCTAATAGAGT
JMFS124A02+           TGGTCACTTGAAAGTTGTCACAGTTGCGAATTGCGGCTTCAAGAAGGATTCTAATAGAGT
                      ____________________________________________________________
consensus             TGGTCACTTGAAAGTTGTCACAGTTGCGAATTGCGGCTTCAAGAAGGATTCTAATAGAGT
 
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JMFS159G02+           ATGGCAGCTTATCGATCCGGGGATCATTGAGAGCTGGCAGACTGTAGAACTTTCCGAAT 
JMFS131D05+           ATGGCAGCTTATCGATCCGGGGATCATTGAGAGCTGGCAGACTGTAGAACTTTCCGAATT
JMFS131E06+           ATGGCAGCTTATCGATCCGGGGATCATTGAGAGCTGGCAGACTGTAGAACTTTCCGAATT
JMFS073E08+           ATGGCAGCTTATCGATCCGGGGATCATTGAGAGCTGGCAGACTGTAGAACTTTCCGAATT
JMFS124A02+           ATGGCAGCTTATCGATCCGGGGATCATTGAGAGCTGGCAGACTGTAGAACTTTCCGAATT
                      ____________________________________________________________
consensus             ATGGCAGCTTATCGATCCGGGGATCATTGAGAGCTGGCAGACTGTAGAACTTTCCGAATT
 
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JMFS131D05+           CTCCACCTCCTGGCTTGGGGAGACTGGTAAAGATTCCCTTGAAAGGATTCTCGGATGCTG
JMFS131E06+           CTCCACCTCCTGGCTTGGGGAGACTGGTAAAGATTCCCTTGAAAGGATTCTCGGATGCTG
JMFS073E08+           CTCCACCTCCTGGCTTGGGGAGACTGGTAAAGATTCCCTTGAAAGGATTCTCGGATGC  
JMFS124A02+           CTCCACCTCCTGGCTTGGGGAGACTGGTAAAGATTCCCTTGAAAGGATTCTCGGATGCTG
                      ____________________________________________________________
consensus             CTCCACCTCCTGGCTTGGGGAGACTGGTAAAGATTCCCTTGAAAGGATTCTCGGATGCTG
 
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JMFS131D05+           ATGCCATTAGCACA                                              
JMFS131E06+           ATGCCATTAGCACACACAACGTCAGATTCGTGATTATCCTTTGTCGAGAATCAAAGCTCT
JMFS124A02+           ATGCCATTAGCACACACAACGTCAGATTCGTGATTATCCTTTGTCGAGAATCAAAGCTCT
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consensus             ATGCCATTAGCACACACAACGTCAGATTCGTGATTATCCTTTGTCGAGAATCAAAGCTCT