Contig 000494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS123E02Sequence575000494 (4)ref|XP_009767344.1|2e-34PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMFS124C08Sequence566000494 (4)ref|XP_009767344.1|4e-33PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMFS132B10Sequence625000494 (4)ref|XP_009767344.1|2e-43PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMSF029J21Sequence641000494 (4)ref|XP_009767344.1|2e-53PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180489022574ref|XP_009587870.1|1e-41PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180

Alignment

This contig is upended


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JMSF029J21+                                     CCGGAGAACGAGTTGGAGGAGAGATCCAGGAACC
                      ____________________________________________________________
consensus                                       CCGGAGAACGAGTTGGAGGAGAGATCCAGGAACC
 
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JMSF029J21+           GGAGGNTGCGAGGAACACCGCCGGGGATTCCACCGGACATAAAGTTCCGAGCGACGTTGA
JMFS132B10+                                              GACATAAAGTTCCGAGCGACGTTGA
                      ____________________________________________________________
consensus             GGAGGNTGCGAGGAACACCGCCGGGGATTCCACCGGACATAAAGTTCCGAGCGACGTTGA
 
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JMSF029J21+           GAACTTGCAGATTCGTCAGGTTCGAAATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
JMFS132B10+           GAACTTGCAGATTCGTCAGGTTCGAAATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
JMFS124C08+                                             CGGGAGGTCGCCGGAGAGCGAGTTGT
JMFS123E02+                                    AATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
                      ____________________________________________________________
consensus             GAACTTGCAGATTCGTCAGGTTCGAAATCCCCGGCGGGAGGTCGCCGGAGAGCGAGTTGT
 
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JMSF029J21+           TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
JMFS132B10+           TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
JMFS124C08+           TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
JMFS123E02+           TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
                      ____________________________________________________________
consensus             TATGCAGGTAAACCGCACGCAACAGAGAGCACCGCGACAGCCCCCGCGGCACGGAGCCGT
 
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JMSF029J21+           TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
JMFS132B10+           TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
JMFS124C08+           TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
JMFS123E02+           TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
                      ____________________________________________________________
consensus             TGAGGTTGTTGGAATGCAGGCTTAACCTGCGCAGCTGGCGCAGGTTAGCAATCCGTTCAG
 
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JMSF029J21+           TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
JMFS132B10+           TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
JMFS124C08+           TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
JMFS123E02+           TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
                      ____________________________________________________________
consensus             TTATCCGTCCCCGAAGCTGAAGGCGCGGCAGGCGGAGCTCAACAACGCGGCCGCCGTCAC
 
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JMSF029J21+           ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
JMFS132B10+           ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
JMFS124C08+           ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
JMFS123E02+           ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
                      ____________________________________________________________
consensus             ACCGAATCCCAACCCAGTCACACGGAGCCGACGGCGTGGAAGCATCCCAGCCGTCCAATG
 
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JMSF029J21+           CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
JMFS132B10+           CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
JMFS124C08+           CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
JMFS123E02+           CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
                      ____________________________________________________________
consensus             CGCCAAGCGGATCTTCCAAGTTCCCCTTGAACGACAGCAACGCCTCAACCTCCATCTCCT
 
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JMSF029J21+           CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
JMFS132B10+           CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
JMFS124C08+           CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
JMFS123E02+           CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
                      ____________________________________________________________
consensus             CCGGCGTCGGCGACGCCGCAGTCGCAAAAGCAGAGGAAATTAACAACATATGCAGAAATA
 
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JMSF029J21+           GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
JMFS132B10+           GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
JMFS124C08+           GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
JMFS123E02+           GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
                      ____________________________________________________________
consensus             GCGCCACCGCTGTCGCGGCGGCGGCGAAGAAGGAAAAAGTAGCCGTTGACATGAGAGCGG
 
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JMSF029J21+           GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
JMFS132B10+           GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
JMFS124C08+           GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
JMFS123E02+           GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
                      ____________________________________________________________
consensus             GGGTGAAGGCTATGGGAGCGTATTGCAGACTGAGAAGGAGAAGAAAGATGACAAGATCGA
 
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JMSF029J21+           GGCCAT                                                      
JMFS132B10+           GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC
JMFS124C08+           GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC
JMFS123E02+           GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC
                      ____________________________________________________________
consensus             GGCCATGTGGCAATGGTGAAGTGCGTTTAGTTTTTGTAAGTATTGTAGGGTTCCGTTTTC