Contig 000483:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS111D01Sequence617000483 (7)ref|XP_009768744.1|6e-22PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]
JMFS159F01Sequence505000483 (7)ref|XP_009768744.1|5e-22PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]
JMSF009B05Sequence275000483 (7)ref|XP_009768744.1|2e-25PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]783001056 (10)ref|XP_009589989.1|6e-13PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF016N16Sequence541000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]761001056 (10)ref|XP_009589989.1|5e-10PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF027I12Sequence650000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]780001056 (10)ref|XP_009589989.1|3e-12PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF050D13Sequence660000483 (7)ref|XP_009768744.1|4e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]759001056 (10)ref|XP_010319634.1|6e-10PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic
JMSF051D13Sequence656000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]760001056 (10)ref|XP_010319634.1|5e-09PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic

Alignment

This contig is upended


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JMSF027I12+                                GTACATCCCCTTCAGATTTGCAGGTTCGGTAGAGTATAA
JMSF050D13+                                          TTCAGATTTGCAGGTTCGGTAGAGTATAA
JMSF051D13+                                          TTCAGATTTGCAGGTTCGGTAGAGTATAA
                      ____________________________________________________________
consensus                                  GTACATCCCCTTCAGATTTGCAGGTTCGGTAGAGTATAA
 
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JMSF027I12+           TGGAGTCACCGCAGATGCTTGTGCAGTGCTCTCTTTACTTTGACCTACTTTTGTGTTTGG
JMSF050D13+           TGGAGTCACCGCAGATGCTTGTGCAGTGCTCTCTTTACTTTGACCTACTTTTGTGTTCGG
JMSF051D13+           TGGAGTCACCGCAGATGCTTGTGCAGTGCTCTCTTTACTTTGACCTACTTTTGTGTTCGG
                      ____________________________________________________________
consensus             TGGAGTCACCGCAGATGCTTGTGCAGTGCTCTCTTTACTTTGACCTACTTTTGTGTTCGG
 
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JMSF027I12+           ATTAGAAGCCTCTGTCAAGCTTTTTGGTGGAAGAGATGGAGGTGTTTTCTGCAGCAGAGG
JMSF050D13+           ATTAGAAGCCTCTGTCAAGCTTTTTGGTGGAAGAGATGGAGGTGTTTTCTGCAGCAGAGG
JMSF016N16+                     TCTGTCAAGCTTTTTGGTGGAAGAGANGGAGGTGTTTTCTGCAGCAGAGG
JMSF051D13+           ATTAGAAGCCTCTGTCAAGCTTTTTGGTGGAAGAGATGGAGGTGTTTTCTGCAGCAGAGG
                      ____________________________________________________________
consensus             ATTAGAAGCCTCTGTCAAGCTTTTTGGTGGAAGAGATGGAGGTGTTTTCTGCAGCAGAGG
 
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JMSF027I12+           AGAACGAACAGGTTGGGGGCCAGCAAGCCAAGCTGAATCTGTCAAGCTTTTTGGTGAAAG
JMSF050D13+           AGAACGAACAGGTTGGGGGCCAGCAAGCCAAGCTGAATCTGTCAAGCTTTTTGGTGAAAG
JMSF016N16+           AGAACGAACAGGTTGGGGGCCAGCAAGCCAAGCTGAATCTGTCAAGCTTTTTGGTGAAAG
JMSF051D13+           AGAACGAACAGGTTGGGGGCCAGCAAGCCAAGCTGAATCTGTCAAGCTTTTTGGTGAAAG
                      ____________________________________________________________
consensus             AGAACGAACAGGTTGGGGGCCAGCAAGCCAAGCTGAATCTGTCAAGCTTTTTGGTGAAAG
 
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JMSF027I12+           AGATGGAGGGGTTTGCTGCAGCAGGGGAGGACGAACAGGTTGGGGGCCTGCAAGCGAAGC
JMSF050D13+           AGATGGAGGGGTTTGCTGCAGCAGGGGAGGACGAACAGGTTGGGGGCCTGCAAGCGAAGC
JMFS159F01+                                              CAGGTTGGGGGCGAGCAAGCCAAGC
JMSF016N16+           AGATGGAGGGGTTTGCTGCAGCAGGGGAGGACGAACAGGTTGGGGGCCTGCAAGCGAAGC
JMSF051D13+           AGATGGAGGGGTTTGCTGCAGCAGGGGAGGACGAACAGGTTGGGGGCCTGCAAGCGAAGC
                      ____________________________________________________________
consensus             AGATGGAGGGGTTTGCTGCAGCAGGGGAGGACGAACAGGTTGGGGGCCTGCAAGCGAAGC
 
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JMSF027I12+           TGAATTTGGGATTTGCCCGAATTGAGGGGGCAGAATGGCAGAATCGGCGACGAGGTGAAC
JMSF050D13+           TGAATTTGGGATTTGCCCGAATTGAGGGGGCAGAAGGGCAGAATCGGCGACGAGGTGAAC
JMFS159F01+           TGAATTTGGGATTTGCCCGAATTGATGGGGGAGAAGGGCAGAATCGGCGACGAGGTGAAC
JMSF016N16+           TGAATTTGGGATTTGCCCGAATTGAGGGGGCAGAAGGGCAGAATCGGCGACGAGGTGAAC
JMSF051D13+           TGAATTTGGGATTTGCCCGAATTGAGGGGGCAGAAGGGCAGAATCGGCGACGAGGTGAAC
                      ____________________________________________________________
consensus             TGAATTTGGGATTTGCCCGAATTGAGGGGGCAGAAGGGCAGAATCGGCGACGAGGTGAAC
 
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JMSF027I12+           TGGAGATGGTTGTAAAGGCGGGGACAGAGACTGAAGAACCGGATCTGGGAGCCTAGTTGC
JMSF050D13+           TGGAGATGGTTGTAAAGGCGGGGACAGAGACTGAAGAACCGGATCTGGGAGCCTAGTTGC
JMFS159F01+           CGGATATGGTTGTAAAGGCGGGGACAGAGACTGAAGAACCGGATCTGGGAGCCTAGTTGC
JMSF016N16+           TGGAGATGGTTGTAAAGGCGGGGACAGAGACTGAAGAACCGGATCTGGGAGCCTAGTTGC
JMSF051D13+           TGGAGATGGTTGTAAAGGCGGGGACAGAGACTGAAGAACCGGATCTGGGAGCCTAGTTGC
                      ____________________________________________________________
consensus             TGGAGATGGTTGTAAAGGCGGGGACAGAGACTGAAGAACCGGATCTGGGAGCCTAGTTGC
 
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JMSF027I12+           CGTGTGAAGCGCGGGCAGATTGGCAGTAAAATACTCAAAAGCAAAGCGAGAGGCGAGGTT
JMSF050D13+           CGTGTGAAGCGCGGGCAGATTGGCAGTAAAATACTCAAAAGCAAAGCGAGAGGCGAGGTT
JMFS159F01+           CGAGTGAAGCGCTGGCGGATTGCCAGTAAAATAATCAAAGGCAAAGCGAGAGGCGAGGTT
JMSF009B05+                              TTGGCAGTAAAATACTCAAAAGCAAAGCGAGAGGCGAGGTT
JMSF016N16+           CGTGTGAAGCGCGGGCAGATTGGCAGTAAAATACTCAAAAGCAAAGCGAGAGGCGAGGTT
JMSF051D13+           CGTGTGAAGCGCGGGCAGATTGGCAGTAAAATACTCAAAAGCAAAGCGAGAGGCGAGGTT
JMFS111D01+              GTGAAGCGCGGGCGGATTGGCAGTAAAATACTCAAAGGCAAAGCGAGAGGCGAGGTT
                      ____________________________________________________________
consensus             CGTGTGAAGCGCGGGCAGATTGGCAGTAAAATACTCAAAAGCAAAGCGAGAGGCGAGGTT
 
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JMSF027I12+           CTGAGCGTCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAACTCCATTTAC
JMSF050D13+           CTGAGCGTCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAACTCCATTTAC
JMFS159F01+           CTGAGCGTCCTTAGCGGAGCGGCACTGATTCCCCGCCGACTGAAATGAAATTCCATTTAC
JMSF009B05+           CTGAGCGTCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAACTCCATTTAC
JMSF016N16+           CTGAGCGTCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAACTCCATTTAC
JMSF051D13+           CTGAGCGTCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAACTCCATTTAC
JMFS111D01+           CTGAGCATCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAATTCCAATTAC
                      ____________________________________________________________
consensus             CTGAGCGTCCTTAGCGGAGCGGCACTGATTCGGCGGCGACTGAAAAGAAACTCCATTTAC
 
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JMSF027I12+           GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGACGTGTACTC
JMSF050D13+           GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGACGTGTACTC
JMFS159F01+           GGTGACAGTGACGTTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGAGGTGTACTC
JMSF009B05+           GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGACGTGTACTC
JMSF016N16+           GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGACGTGTACTC
JMSF051D13+           GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGACGTGTACTC
JMFS111D01+           GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGAGGTGTACTC
                      ____________________________________________________________
consensus             GGTGACGGTGGCGGTGAATCGTGCGTCGTGATCGGGACCGACCTTCACCGACGTGTACTC
 
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JMSF027I12+           CGGCAACGTCACCGAATAGCGTTGGCACAGCTCTTGCAGCTTAGACTTGTACATTCTTTC
JMSF050D13+           CGGCAACGTCACCGAATAGCGTTGGCACAGCTCTTGCAGCTTAGACTTGTACATTCTTTC
JMFS159F01+           CGGCAACACCACCGAGTAGCGTTGGCACAGCTCTTGCAGCTTCGACTTGTACATTCTT  
JMSF009B05+           CGGCAACGTCACCGAATAGCGTTGGCACAGCTCTTGCAGCTTAGACTTGTACATTCTT  
JMSF016N16+           CGGCAACGTCACCGAATAGCGTTGGCACAGCTCTTGCAGCTTAGACTTGTACATTCTTTC
JMSF051D13+           CGGCAACGTCACCGAATAGCGTTGGCACAGCTCTTGCAGCTTAGACTTGTACATTCTTTC
JMFS111D01+           CGGCAACGCCACCAAGTAGCGTTGGCACAACTCTTGCAGCTTCGACTTGTACATTC-TTC
                      ____________________________________________________________
consensus             CGGCAACGTCACCGAATAGCGTTGGCACAGCTCTTGCAGCTTAGACTTGTACATTCTTTC
 
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JMSF027I12+           ACTCCGTCAC                                                  
JMSF050D13+           ACTCCGTCACACTCAC                                            
JMSF016N16+           ACTCCGTCAC                                                  
JMSF051D13+           ACTCCGTCACACTCAC                                            
JMFS111D01+           AATTCGTCACACTCACTCAGGTTTTCCTCTGCACTGCACTGCACTGCACTGCTATGCTGA
                      ____________________________________________________________
consensus             ACTCCGTCACACTCACTCAGGTTTTCCTCTGCACTGCACTGCACTGCACTGCTATGCTGA
 
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JMFS111D01+           TGTCGTTTCCGAGGTTCTTTCAATTTCATTTGGATTCCTTTCCTGTTTTATAACTCGCAC
                      ____________________________________________________________
consensus             TGTCGTTTCCGAGGTTCTTTCAATTTCATTTGGATTCCTTTCCTGTTTTATAACTCGCAC
 
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JMFS111D01+           ATATTCAAAGCCACGCTGGATATGAGCAAGATTACGAGGAGTAACTGTATGTACAATGTA
                      ____________________________________________________________
consensus             ATATTCAAAGCCACGCTGGATATGAGCAAGATTACGAGGAGTAACTGTATGTACAATGTA