| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039J11 | Sequence | 594 | 000480 (5) | dbj|BAQ15377.1| | 2e-136 | cryptochrome 1 [Ipomoea nil] | 681 | 006767 (7) | dbj|BAQ15377.1| | 8e-55 | cryptochrome 1 [Ipomoea nil] |
| JMFF045M01 | Sequence | 605 | 000480 (5) | dbj|BAN14730.1| | 1e-141 | cryptochrome 1, partial [Lotus japonicus] | 587 | 006767 (7) | dbj|BAF95170.1| | 3e-14 | cryptochrome 1 [Ipomoea nil] |
| JMFS106E02 | Sequence | 343 | 000480 (5) | dbj|BAQ15377.1| | 1e-57 | cryptochrome 1 [Ipomoea nil] | |||||
| JMFS137G08 | Sequence | 195 | 000480 (5) | gb|AJA72482.1| | 1e-34 | cryptochrome 1, partial [Ipomoea purpurea] | |||||
| JMSF031N11 | Sequence | 640 | 000480 (5) | gb|AEA50861.1| | 7e-138 | cry1-2 [Populus tremula] | 767 | 016133 | ref|XP_006364857.1| | 6e-32 | PREDICTED: cryptochrome-1-like isoform X1 [Solanum tuberosum] ref|XP_006364858.1 |
This contig is upended
. : . : . : . : . : . :
JMSF031N11+ TTN
____________________________________________________________
consensus TTN
. : . : . : . : . : . :
JMSF031N11+ TTCCATACCGTTNTCAATTGCAGCTCTCGAGGCGGCTTCACGCTGTGCCATATGAACAAG
____________________________________________________________
consensus TTCCATACCGTTNTCAATTGCAGCTCTCGAGGCGGCTTCACGCTGTGCCATATGAACAAG
. : . : . : . : . : . :
JMSF031N11+ GGCTGCTTGCAATCTTACCTTTGNTGCATCGATTTCAACAACCGGAAGAGGATAGTTGGA
JMFF045M01+ AGAGGATAGTTGGA
____________________________________________________________
consensus GGCTGCTTGCAATCTTACCTTTGNTGCATCGATTTCAACAACCGGAAGAGGATAGTTGGA
. : . : . : . : . : . :
JMSF031N11+ ACCTAGTTCAATTCCAGCTGCTTGGAGAACCGACTCGGGTGCATTCCAAGGATGGTGTAT
JMFF045M01+ TCCTAGCTCAATCCCAGCTGCTTGCAGAACAGATTCCGGGGCGTTCCAGGGATGGTGAAT
____________________________________________________________
consensus TCCTAGTTCAATTCCAGCTGCTTGGAGAACCGATTCGGGTGCGTTCCAGGGATGGTGTAT
. : . : . : . : . : . :
JMSF031N11+ CCATTCGGTAGGAAGTCGAGCAAGCTCGGGAAGCCAACGGCGTACATACTCCCCATTCGG
JMFF045M01+ CCACTCGGTTGGAAGCCGAACAAGTTCAGGAAGCCACCGACGTACATACTCCCCATTCGG
____________________________________________________________
consensus CCATTCGGTTGGAAGTCGAGCAAGTTCGGGAAGCCACCGGCGTACATACTCCCCATTCGG
. : . : . : . : . : . :
JMSF031N11+ GTCAAATTTGTAGCCCTCAAACTGTGGATTATCAATTCGATCAAATTCACGGGCATCTGG
JMFF045M01+ GTCACATTTGTAACCTTCAAACTGTGGATTATCAATGCGGTCTAATTCGCGGCCATCGGG
JMFF039J11+ AATTCGCGGCCATCGGG
____________________________________________________________
consensus GTCACATTTGTAGCCTTCAAACTGTGGATTATCAATTCGGTCTAATTCGCGGCCATCGGG
. : . : . : . : . : . :
JMSF031N11+ TAGGGTACCAGTGATGTATTGCCAACCAAGAGCATCGCTCTCGAGATCTGCATCTAACAG
JMFF045M01+ TATGGTGCCAGAGATGTATTGCCAACCGAGAGCATCACTCTCGAGATCTGCATCTAATAG
JMFF039J11+ TATGGTGCCAGAGATGTATTGCCAACCGAGAGCATCACTCTCGAGATCTGCATCTAATAG
____________________________________________________________
consensus TATGGTGCCAGAGATGTATTGCCAACCGAGAGCATCACTCTCGAGATCTGCATCTAATAG
. : . : . : . : . : . :
JMSF031N11+ AGTATCCCAAAAGTACTTCATTCCCCATCTCCAAGAAAGCTGAAGAACCTTAACGAAGAA
JMFF045M01+ AGTATCCCAAAAGTACTTCACTCCCCATCTCCATGGAAGCTGCAAAACTTTGACAAAGAA
JMFF039J11+ AGTATCCCAAAAGTACTTCACTCCCCATCTCCATGGAAGCTGCAAAACTTTGACAAAGAA
____________________________________________________________
consensus AGTATCCCAAAAGTACTTCACTCCCCATCTCCATGGAAGCTGCAAAACTTTGACAAAGAA
. : . : . : . : . : . :
JMSF031N11+ ACTCGACACTACAACTCGTATCCGGTCATGTAACCATCCAGTAGCCCAGAGTTCTCTCAT
JMFF045M01+ ACTAGAAACTACAACGCGTATCCTATCATGTAGCCAGCCGGTTGCCCAGAGCTCTCTCAT
JMFF039J11+ ACTAGAAACTACAACGCGTATCCTATCATGTAGCCAGCCGGTTGCCCAGAGCTCTCTCAT
____________________________________________________________
consensus ACTAGAAACTACAACGCGTATCCTATCATGTAGCCAGCCGGTTGCCCAGAGCTCTCTCAT
. : . : . : . : . : . :
JMSF031N11+ GCCCGCATCCACCAAAGGATAACCCGTTCTGCCTTGCCTCCACGCCTTAAAATAGCCCTC
JMFF045M01+ ACCAGCATCCACGAGAGGGTAACCAGTTCTGCCTTGCCTCCACGCCTTAAAGTAGCCCTC
JMFF039J11+ ACCAGCATCCACGAGAGGGTAACCAGTTCTGCCTTGCCTCCACGCCTTAAAGTAGCCCTC
____________________________________________________________
consensus ACCAGCATCCACGAGAGGGTAACCAGTTCTGCCTTGCCTCCACGCCTTAAAGTAGCCCTC
. : . : . : . : . : . :
JMSF031N11+ ATCTACTACCCAAGGAAAGTGCTTTAGATGACCAAGAAGGGGCCTTTCATGGCTGTAAGG
JMFF045M01+ GTTAATTACCCATGGGAAGTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGCTGTATGG
JMFS137G08+ GTACTTTAGATGACCAAGCAGAGGCCTTTCGTGGCTGTATGA
JMFF039J11+ GTTAATTACCCATGGGAAGTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGCTGTATGG
JMFS106E02+ GTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGGTGTATGG
____________________________________________________________
consensus GTTAATTACCCATGGGAAGTACTTTAGATGACCAAGGAGAGGCCTTTCGTGGCTGTATGG
. : . : . : . : . : . :
JMSF031N11+ ATGATTGAAACTCATATATCTTGAATACTCTC
JMFF045M01+ ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
JMFS137G08+ ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
JMFF039J11+ ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
JMFS106E02+ ATGGTTAAAGCTCATATATCTCGAACACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
____________________________________________________________
consensus ATGGTTAAAGCTCATATATCTCGAATACTCTCTCAGCCCAATGGATTTGAGGAACAGATT
. : . : . : . : . : . :
JMFF045M01+ CACACTCTCTTCGC
JMFS137G08+ CACACTCTATTCGCCTGCTATGTTCCCTTCGTTGGCCCAGAGAACTTGCTTCATTCGAAC
JMFF039J11+ CACACTCTCTTCGCCTGCTATGTTCCCTTCGTTGGCCCAGAGAACTTGCTTCATTCGAAC
JMFS106E02+ CACACTCTCTTCGCGTGATATGTTCCCTTCGTGGGCACAGAGAACGTGTTTCATTCGAAC
____________________________________________________________
consensus CACACTCTCTTCGCCTGCTATGTTCCCTTCGTTGGCCCAGAGAACTTGCTTCATTCGAAC
. : . : . : . : . : . :
JMFS137G08+ CAGATGGAATGCTTTCCGAACGCTTACTTCCCC
JMFF039J11+ CAGATGGAATGCTTTCCGAACGCTTACTTCCCCAAAGTGTAAATGCGGGGAAAGAAATGA
JMFS106E02+ CAGATGGAATGCTTTCCGAACGCTTACTTCCCCAAAGTGTAAATGCGGGGAAAAAAATGA
____________________________________________________________
consensus CAGATGGAATGCTTTCCGAACGCTTACTTCCCCAAAGTGTAAATGCGGGGAAAGAAATGA
. : . : . : . : . : . :
JMFF039J11+ GGTTGTTGCACTATCAGCCTTTCTTCGGTTCTGTGAGTACTCAATCAATGGCCCGTTTAT
JMFS106E02+ GGGTGTTGCACTAACAGCCTTTCTGGGGTTGTGTGAGTACTCAATCAATGGCCCGTATAT
____________________________________________________________
consensus GGTTGTTGCACTATCAGCCTTTCTTGGGTTGTGTGAGTACTCAATCAATGGCCCGTTTAT
. : . : . : . : . : . :
JMFF039J11+ AAAAGCTGTTAATGCCTTAT
JMFS106E02+ AAAAGCTGTAAATGCCTTATGAGCATTCCTCCAAACAGGGGACCATGCCCGAGCAAAAAG
____________________________________________________________
consensus AAAAGCTGTTAATGCCTTATGAGCATTCCTCCAAACAGGGGACCATGCCCGAGCAAAAAG