Contig 000478:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS010H09Sequence636000478 (10)
JMFS015F10Sequence532000478 (10)
JMFS025G06Sequence614000478 (10)
JMFS039C12Sequence600000478 (10)
JMFS051G11Sequence511000478 (10)
JMFS060F11Sequence612000478 (10)ref|XP_009782518.1|6e-61PREDICTED: protein argonaute 2 [Nicotiana sylvestris]
JMFS078E07Sequence642000478 (10)ref|XP_009782518.1|2e-50PREDICTED: protein argonaute 2 [Nicotiana sylvestris]
JMFS091G02Sequence590000478 (10)
JMFS105H02Sequence615000478 (10)
JMFS140G09Sequence576000478 (10)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS060F11+ ATCAGGGGAGAAATAGTA
                      ____________________________________________________________
consensus ATCAGGGGAGAAATAGTA
 
. : . : . : . : . : . :
JMFS060F11+ CTTTCCAACAGGTATCCTGCTTCTTGAAGGGTTGTCTTTCATCACCAAATCCATAGACTG
JMFS078E07+ ATAGCCTG
                      ____________________________________________________________
consensus CTTTCCAACAGGTATCCTGCTTCTTGAAGGGTTGTCTTTCATCACCAAATCCATAGCCTG
 
. : . : . : . : . : . :
JMFS060F11+ GAGAATTTCACGAGGTATGTGAGAGACGGTTCCACCCAAGTAATCCTTAAGCTTTGAAAG
JMFS078E07+ GAGAATTTCACGAGGTATGTGAGAGACGGTTCCACCCAAGTAATCCTTAAGCTTTGAAAG
                      ____________________________________________________________
consensus GAGAATTTCACGAGGTATGTGAGAGACGGTTCCACCCAAGTAATCCTTAAGCTTTGAAAG
 
. : . : . : . : . : . :
JMFS060F11+ CTTTAAGTCAGCAACATGCTTGATGGTGAACATATATGTGCGAGTCCTGGAACCATCTCC
JMFS078E07+ CTTTAAGTCAGCAACATGCTTGATGGTGAACATATATGTGCGAGTCCTGGAACCATCTCC
                      ____________________________________________________________
consensus CTTTAAGTCAGCAACATGCTTGATGGTGAACATATATGTGCGAGTCCTGGAACCATCTCC
 
. : . : . : . : . : . :
JMFS060F11+ AGACAAAACCACCTTGAATTCTCCACTAGGTAGTGGAGCTACACTGAAAACGTTCTTCTC
JMFS078E07+ AGACAAAACCACCTTGAATTCTCCACTAGGTAGTGGAGCTACACTGAAAACGTTCTTCTC
                      ____________________________________________________________
consensus AGACAAAACCACCTTGAATTCTCCACTAGGTAGTGGAGCTACACTGAAAACGTTCTTCTC
 
. : . : . : . : . : . :
JMFS060F11+ TCCATCATAAGTAGTCATGTCCACAGGAAACCCACTAGGATTATCAGCGAACAGTTGCTT
JMFS078E07+ TCCATCATAAGTAGTCATGTCCACAGGAAACCCACTAGGATTATCAGCGAACAGTTGCTT
                      ____________________________________________________________
consensus TCCATCATAAGTAGTCATGTCCACAGGAAACCCACTAGGATTATCAGCGAACAGTTGCTT
 
. : . : . : . : . : . :
JMFS060F11+ CTTGATCATGGCAAGATCAGATCTTGAAATCGTCTTCTTGGTTGGCTCATTCTCAACTTT
JMFS078E07+ CTTGATCATGGCAAGATCAGATCTTGAAATCGTCTTCTTGGTTGGCTCATTCTCAACTTT
                      ____________________________________________________________
consensus CTTGATCATGGCAAGATCAGATCTTGAAATCGTCTTCTTGGTTGGCTCATTCTCAACTTT
 
. : . : . : . : . : . :
JMFS060F11+ GACTTGCTTGACATCCACGTCGTAGTGGAATATGGTTGTGTTTGGATTAAAAGTAACTGG
JMFS078E07+ GACTTGCTTGACATCCACGTCGTAGTGGAATATGGTTGTGTTTGGATTAAAAGTAACTGG
JMFS025G06+ AACTGG
                      ____________________________________________________________
consensus GACTTGCTTGACATCCACGTCGTAGTGGAATATGGTTGTGTTTGGATTAAAAGTAACTGG
 
. : . : . : . : . : . :
JMFS060F11+ GAAATGATTAACAAGCAGATTGATTTTCCTGATTGCAATGGTTCCAACATTTGGCCTTTT
JMFS078E07+ GAAATGATTAACAAGCAGATTGATTTTCCTGATTGCAATGGTTCCAACATTTGGCCTTTT
JMFS025G06+ GAAATGATTAACAAGCAGATTGATTTTCCTGATGCAATGGTTTCCAACATTTGGCCTTTT
JMFS010H09+ TTCCAACATTGGGCCTTTT
                      ____________________________________________________________
consensus GAAATGATTAACAAGCAGATTGATTTTCCTGATTGCAATGGTTCCAACATTTGGCCTTTT
 
. : . : . : . : . : . :
JMFS060F11+ GATTGGTGCAAACTTGTTCTTTGAACCTTCATGAGGCAATTGCCTCACGCTAGTCTCAAC
JMFS078E07+ GATTGGTGCAAACTTGTTCTTTGAACCTTCATGAGGCAATTGCCTCACGCTAGTCTCAAC
JMFS025G06+ GATTGGTGCAAACTTGTTCTTTGAACCTTCATGAGGCAATTGCCTCACGCTAGTCTCAAC
JMFS010H09+ GATTGGTGCAAACTTGTTCTTTGAACTTTCATGAGGCAATTGCCTCACGCTAGTCTCAAC
JMFS140G09+ AAC
JMFS091G02+ TGCCTCACGCTAGTCTCAAC
                      ____________________________________________________________
consensus GATTGGTGCAAACTTGTTCTTTGAACCTTCATGAGGCAATTGCCTCACGCTAGTCTCAAC
 
. : . : . : . : . : . :
JMFS060F11+ AGGTACTGGAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGA
JMFS078E07+ AGGTACTGGAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGAGACCAT
JMFS025G06+ AGGTACTGGAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGAGACCAT
JMFS015F10+ GCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGAGACCAT
JMFS010H09+ AGGTACTGGAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGAGACCAT
JMFS140G09+ AGGTACTGGAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTAAGGAGAAGAGACCAT
JMFS091G02+ AGGTACTGAAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGAGACCAT
JMFS039C12+ CCAT
                      ____________________________________________________________
consensus AGGTACTGGAGGCAAAGCAGTGACTTGGGGTTGAGACTGAGACTGAGGAGAAGAGACCAT
 
. : . : . : . : . : . :
JMFS078E07+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
JMFS025G06+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
JMFS015F10+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
JMFS010H09+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
JMFS140G09+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
JMFS091G02+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
JMFS051G11+ ATGCTGAAGTTG
JMFS039C12+ GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTNAAGTTG
                      ____________________________________________________________
consensus GGATGGACCCCAGGGCCTTGGTCCTCCAGAGGGACCCGCACTCCGTGGATGCTGAAGTTG
 
. : . : . : . : . : . :
JMFS078E07+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCA
JMFS025G06+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS015F10+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS010H09+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS140G09+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS091G02+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS051G11+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS039C12+ GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
JMFS105H02+ CGGGTTGCGGTTGCTG
                      ____________________________________________________________
consensus GGGGCGATGGGACCCACCCCAAGCACCAGTGGCACTACCGCCACCGGGTTGCGGTTGCTG
 
. : . : . : . : . : . :
JMFS025G06+ CTGCTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS015F10+ CTGCTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS010H09+ CTGCTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS140G09+ CTGCTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS091G02+ CTGCTGAAACGGTGGCCGCTGTGGGACACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS051G11+ CTGNTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS039C12+ CTGCTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
JMFS105H02+ CTGCTGAAACGGTGGCCGCTGT-GGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
                      ____________________________________________________________
consensus CTGCTGAAACGGTGGCCGCTGTGGGCCACCCCAGGCCGGAGTGCCACTAGGCTGCTGAAA
 
. : . : . : . : . : . :
JMFS025G06+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS015F10+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS010H09+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS140G09+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS091G02+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS051G11+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS039C12+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
JMFS105H02+ CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
                      ____________________________________________________________
consensus CTGTGCTCGTGGTGGTGGACCCCACGCGCCACTACCAACAGGCTGCTGTTGCCCTCTCCA
 
. : . : . : . : . : . :
JMFS025G06+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS015F10+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS010H09+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS140G09+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS091G02+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS051G11+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS039C12+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
JMFS105H02+ AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
                      ____________________________________________________________
consensus AGGAGCCCCGCCAACCGGATTCACCGGACCCTGCTGGTGAGGTCGCGGATCCCCACGGCC
 
. : . : . : . : . : . :
JMFS025G06+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS015F10+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS010H09+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS140G09+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS091G02+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS051G11+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS039C12+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
JMFS105H02+ CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
                      ____________________________________________________________
consensus CTGCCCGTATCCACCCCGGTAAGATCCACCTCCACCTCCACGTCCACCCCGGCCGCCGGC
 
. : . : . : . : . : . :
JMFS025G06+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS015F10+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS010H09+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS140G09+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS091G02+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS051G11+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS039C12+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
JMFS105H02+ GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
                      ____________________________________________________________
consensus GCCGGCAACACCTTGATCACCTTGACCTTGTTGACCCCGACCCCCGCCGCGACCACGGCC
 
. : . : . : . : . : . :
JMFS025G06+ TCCGCCAC
JMFS015F10+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
JMFS010H09+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
JMFS140G09+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
JMFS091G02+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
JMFS051G11+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
JMFS039C12+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
JMFS105H02+ TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
                      ____________________________________________________________
consensus TCCGCCACGCCTCCCATTTCCGCCTTCCATATCCACACTCAAATAACTATAACAATACCA
 
. : . : . : . : . : . :
JMFS015F10+ AAA
JMFS010H09+ AAACAA
JMFS140G09+ AAACAATAAA
JMFS091G02+ AAACAATAAACCTTATCTTAGCTCAAATGC
JMFS051G11+ AAACAATAAACCTTATCTTAGCTCAAATGCCTCACTATCAACTGAAAATGCATTTATGAA
JMFS039C12+ AAACAATAAACCTTATCTTAGCTCAAATGCCTCACTATCAACTGAAAATGCATTTATGAA
JMFS105H02+ AAACAATAAACCTTATCTTAGCTCAAATGCCTCACTATCAACTGAAAATGCATTTATGAA
                      ____________________________________________________________
consensus AAACAATAAACCTTATCTTAGCTCAAATGCCTCACTATCAACTGAAAATGCATTTATGAA
 
. : . : . : . : . : . :
JMFS051G11+ GATCAATGTAAAGCAAAAA
JMFS039C12+ GATCAATGTAAAGCAAAAACTACACTTTTATACGCAAGGAATCTAGTCTTGTCTAG
JMFS105H02+ GATCAATGTAAAGCAAAAACTACACTTTTATACGCAAGGAATCTAGTCTTGTCTAGCTGA
                      ____________________________________________________________
consensus GATCAATGTAAAGCAAAAACTACACTTTTATACGCAAGGAATCTAGTCTTGTCTAGCTGA
 
. : . : . : . : . : . :
JMFS105H02+ AAATGACGAAAAAGGGTTCCTTAGCCTTAGGCCCCAAGCATCGACCTCTGATTTGCTAAA
                      ____________________________________________________________
consensus AAATGACGAAAAAGGGTTCCTTAGCCTTAGGCCCCAAGCATCGACCTCTGATTTGCTAAA
 
. : . : . : . : . : . :
JMFS105H02+ GAACAAGAAAAATCATGAAAATTCTAGAAAGACCCATTGAAAAGAGAAAACGCGTAGTGA
                      ____________________________________________________________
consensus GAACAAGAAAAATCATGAAAATTCTAGAAAGACCCATTGAAAAGAGAAAACGCGTAGTGA