Contig 000465:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS094A11Sequence625000465 (2)gb|AGK43932.1|5e-137phytochrome B, partial [Orthocarpus tenuifolius]
JMFS095E04Sequence601000465 (2)gb|AAC49298.1|6e-121phytochrome B1, partial [Solanum lycopersicum] prf||2207375B phytochrome

Alignment

This contig is upended


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JMFS094A11+                                                           CATTTCACAAGA
                      ____________________________________________________________
consensus                                                             CATTTCACAAGA
 
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JMFS094A11+           TCCCTTATACTAGGGCTCTGGGTAACAATCCCAGTGGCGGAGTCCCTTAGAAGCATGTCA
                      ____________________________________________________________
consensus             TCCCTTATACTAGGGCTCTGGGTAACAATCCCAGTGGCGGAGTCCCTTAGAAGCATGTCA
 
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JMFS094A11+           CACAACAGTGTTTGTGTCCTTAACACATGTTTTTCTGCCAATTGTGATGCCAATTGCAAT
                      ____________________________________________________________
consensus             CACAACAGTGTTTGTGTCCTTAACACATGTTTTTCTGCCAATTGTGATGCCAATTGCAAT
 
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JMFS094A11+           TCCATATTCAATTGGAGCCCAAAGGCCTGCATAAGAAACTCACAGGCATAACGAAGGGGG
JMFS095E04+                                                                      G
                      ____________________________________________________________
consensus             TCCATATTCAATTGGAGCCCAAAGGCCTGCATAAGAAACTCACAGGCATAACGAAGGGGG
 
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JMFS094A11+           AATGCAATACTCCTAGCCGAAGTGTGATGGCCTACAACCAACCCCCATAGCCTCATCGAA
JMFS095E04+           AATGCAATACTCCTAGCCGAAGTGTGATGGCCTACAACCAACCCCCATAGCCTCATCGAA
                      ____________________________________________________________
consensus             AATGCAATACTCCTAGCCGAAGTGTGATGGCCTACAACCAACCCCCATAGCCTCATCGAA
 
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JMFS094A11+           TTCCTCCCTCCAACACCTTCATCTTCGTTCCCATTTACAATAACTGCCAGAGTTAACGAG
JMFS095E04+           TTCCTCCCTCCAACACCTTCATCTTCGTTCCCATTTACAATAACTGCCAGAGTTAACGAG
                      ____________________________________________________________
consensus             TTCCTCCCTCCAACACCTTCATCTTCGTTCCCATTTACAATAACTGCCAGAGTTAACGAG
 
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JMFS094A11+           GCAATGGAGCCCATATTGGCCATGTACTGGGCATGGCAACCATGAGGAGCCCGTAGAGTC
JMFS095E04+           GCAATGGAGCCCATATTGGCCATGTACTGGGCATGGCAACCATGAGGAGCCCGTAGAGTC
                      ____________________________________________________________
consensus             GCAATGGAGCCCATATTGGCCATGTACTGGGCATGGCAACCATGAGGAGCCCGTAGAGTC
 
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JMFS094A11+           GAACCAACTAAACACAATGGCTGCTTTAGTGATTCATCCTGAATAACACGTACCGGAGAG
JMFS095E04+           GAACCAACTAAACACAATGGCTGCTTTAGTGATTCATCCTGAATAACACGTACCGGAGAG
                      ____________________________________________________________
consensus             GAACCAACTAAACACAATGGCTGCTTTAGTGATTCATCCTGAATAACACGTACCGGAGAG
 
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JMFS094A11+           GCATGGCAATCAACAATCATCCTAACCCTGTTTTGTTTAAACAAAAACCTGGAGGCTTGA
JMFS095E04+           GCATGGCAATCAACAATCATCCTAACCCTGTTTTGTTTAAACAAAAACCTGGAGGCTTGA
                      ____________________________________________________________
consensus             GCATGGCAATCAACAATCATCCTAACCCTGTTTTGTTTAAACAAAAACCTGGAGGCTTGA
 
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JMFS094A11+           GGAATATCACTAGCTGGATAGTGCAGCCCAATATAAGGCTCTAAATCTGGTCTTTTGCTT
JMFS095E04+           GGAATATCACTAGCTGGATAGTGCAGCCCAATATAAGGCTCTAAATCTGGTCTTTTGCTT
                      ____________________________________________________________
consensus             GGAATATCACTAGCTGGATAGTGCAGCCCAATATAAGGCTCTAAATCTGGTCTTTTGCTT
 
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JMFS094A11+           TCAGACAAAACCTCCCCATGCTCATCCTCATGAAACTTATACACCATAACTCGATCATAC
JMFS095E04+           TCAGACAAAACCTCCCCATGCTCATCCTCATGAAACTTATACACCATAACTCGATCATAC
                      ____________________________________________________________
consensus             TCAGACAAAACCTCCCCATGCTCATCCTCATGAAACTTATACACCATAACTCGATCATAC
 
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JMFS094A11+           CCGGTTAACTCTC                                               
JMFS095E04+           CCGGTTAACTCTCTCACACACTCAACCACAACATCACAAAGATGCTTAATATTCCCACCA
                      ____________________________________________________________
consensus             CCGGTTAACTCTCTCACACACTCAACCACAACATCACAAAGATGCTTAATATTCCCACCA
 
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JMFS095E04+           GGAAGCGACTGCAAGCGCGAAATGGCCCTCACGGCGAGCTTCTGTGACTGCACAGCCCCG
                      ____________________________________________________________
consensus             GGAAGCGACTGCAAGCGCGAAATGGCCCTCACGGCGAGCTTCTGTGACTGCACAGCCCCG
 
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JMFS095E04+           GCTATGGACAGGGCAGGGTCCTCACTCCGGAATTCTTGGAGTGAACCCAAATAGGGTTCA
                      ____________________________________________________________
consensus             GCTATGGACAGGGCAGGGTCCTCACTCCGGAATTCTTGGAGTGAACCCAAATAGGGTTCA