Contig 000463:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014P10Sequence433000463 (9)ref|XP_009629282.1|2e-27PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana tomentosiform765010543 (5)ref|XP_010325538.1|2e-13PREDICTED: regulator of nonsense transcripts 1 homolog isoform X2 [Solanum lyco
JMFF034F16Sequence495000463 (9)ref|XP_009629282.1|3e-26PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana tomentosiform656010543 (5)
JMFS010E09Sequence580000463 (9)ref|XP_009781095.1|5e-50PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r
JMFS041A04Sequence619000463 (9)ref|XP_009781095.1|7e-64PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r
JMFS047F04Sequence618000463 (9)ref|XP_009781095.1|5e-70PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r
JMFS063B03Sequence627000463 (9)ref|XP_009781095.1|2e-66PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r
JMFS094F04Sequence626000463 (9)ref|XP_009781095.1|2e-43PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r
JMFS100A02Sequence609000463 (9)ref|XP_009781095.1|2e-50PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r
JMFS125E06Sequence566000463 (9)ref|XP_009781095.1|2e-54PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana sylvestris] r

Alignment

This contig is upended


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JMFS047F04+                                                                  TATGC
                      ____________________________________________________________
consensus                                                                    TATGC
 
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JMFS047F04+           GAGCCTGAAGTATTCCCCCTAGAATTGCAGAACCACTTGCGACATGACGGCACATTGCAC
JMFS063B03+                      ATTCCCCCTAGAATTGCAGAACCACTTGCGACATGACGGCACATTGCAC
JMFS125E06+                                                               CATTGCAC
JMFS041A04+                              TAGAATTGCAGAACCACTTGCGACATGACGGCACATTGCAC
                      ____________________________________________________________
consensus             GAGCCTGAAGTATTCCCCCTAGAATTGCAGAACCACTTGCGACATGACGGCACATTGCAC
 
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JMFS047F04+           CTGACAACACAGGCGGGGTTTGTTATACCACAGTACCGACAAGCATGCTCCACGGCAAAA
JMFS063B03+           CTGACAACACAGGCGGGGTTTGTTATGCCACAGTACCGACAAGCATGCTCCACGGCAAAA
JMFS125E06+           CTGACAACACAGGCGGGGTTTGTTATGCCACAGTACCGACAAGCATGCTCCACGGCAAAA
JMFS041A04+           CTGACAACACAGGCGGGGTTTGTTATGCCACAGTACCGACAAGCATGCTCCACGGCAAAA
JMFS010E09+                    CAGGCGGGGTTTGTTATACCACAGTACCGACAAGCATGCTCCACGGCAAAA
JMFS100A02+                  CACAGGCGGGGTTTGTTATACCACAGTACCGACAAGCATGCTCCACGGCAAAA
JMFS094F04+                                            TACCGACAAGCATGCTCCACGGCAAAA
                      ____________________________________________________________
consensus             CTGACAACACAGGCGGGGTTTGTTATGCCACAGTACCGACAAGCATGCTCCACGGCAAAA
 
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JMFS047F04+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
JMFS063B03+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
JMFS125E06+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
JMFS041A04+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
JMFS010E09+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
JMFS100A02+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
JMFS094F04+           TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
                      ____________________________________________________________
consensus             TCCCCTTTCCCGTACTCAAACCCCTCATCATCCCCAGTCTCCTCAAAATTCAACCCGCTC
 
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JMFS047F04+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFS063B03+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFS125E06+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFS041A04+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFS010E09+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFS100A02+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFF034F16+                          GCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
JMFS094F04+           ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
                      ____________________________________________________________
consensus             ATCCCAGCGGCTAAGGCATCGAAAGCTGCAGACTGATTACTATTAGCGCCACTATTACTG
 
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JMFS047F04+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFS063B03+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFS125E06+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFS041A04+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFS010E09+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFS100A02+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFF034F16+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFF014P10+                            TCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
JMFS094F04+           CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
                      ____________________________________________________________
consensus             CTACCTTTTCCGCCGGGTCCATTTCCACCGTACCGGGATTTGGTGGAGGGCGAGGTGTCG
 
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JMFS047F04+           GATGAGGGGGGCCTATCTGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFS063B03+           GATGAGGGGGGCCTATCAGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFS125E06+           GATGAGGGGGGCCTATCAGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFS041A04+           GATGAGGGGGGCCTATCAGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFS010E09+           GATGAGGGGGGCCTATCTGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFS100A02+           GATGAGGGGGGCCTATCTGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFF034F16+           GATGAGGGGGGCCTATCTGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFF014P10+           GATGAGGGGGGCCTATCTGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
JMFS094F04+           GATGAGGGGGGCCTATCAGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
                      ____________________________________________________________
consensus             GATGAGGGGGGCCTATCTGGTGTTTCGGAGACCAAGGAATCTGAGGGCGTGGGCCACGCC
 
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JMFS047F04+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFS063B03+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFS125E06+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFS041A04+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFS010E09+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFS100A02+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFF034F16+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFF014P10+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
JMFS094F04+           GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
                      ____________________________________________________________
consensus             GAAGGTCGAATGGGCTGAGAAAGTTCTTGAAAATCCGGGTAATCGAATTCCTCGCCCGGC
 
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JMFS047F04+           GTGTTGAACTCGACGAACGTGTAGGCGTTGTTGCCTGTGTCTGGCTGGGACGCAGTCTCG
JMFS063B03+           GTGTTGAACTCCACGAACGTGTAGGCGTCGTTGCCCGTGTCTGGCTGGGACGCAGTCTCG
JMFS125E06+           GTGTTGAACTCCACGAACGTGTAGGCGTCGTTGCCCGTGTCTGGCTGGGACGCAGTCTCG
JMFS041A04+           GTGTTGAACTCCACGAACGTGTAGGCGTCGTTGCCCGTGTCTGGCTGGGACGCAGTCTCG
JMFS010E09+           GTGTTGAACTCGACGAACGTGTAGGCGTCGTTGCCTGTGTCTGGCTGGGACGCAGTCTCG
JMFS100A02+           GTGTTGAACTCGACGAACGTGTAGGCGTCGTTGCCTGTGTCTGGCTGGGACGCAGTCTCG
JMFF034F16+           GTGTTGAACTCGACGAACGTGTAGGCGTCGTTGCCTGTGTCTGGCTGGGACGCAGTCTCG
JMFF014P10+           GTGTTGAACTCGACGAACGTGTAGGCGTCGTTGCCTGTGTCTGGCTGGGACGCAGTCTCG
JMFS094F04+           GTGTTGAACTCCACGAACGTGTAGGCGTCGTTGCCCGTGTCTGGCTGGGACGCAGTCTCG
                      ____________________________________________________________
consensus             GTGTTGAACTCGACGAACGTGTAGGCGTCGTTGCCTGTGTCTGGCTGGGACGCAGTCTCG
 
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JMFS047F04+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTTGG
JMFS063B03+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTT-G
JMFS125E06+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTT-G
JMFS041A04+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTT-G
JMFS010E09+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTTGG
JMFS100A02+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTTGG
JMFF034F16+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTTGG
JMFF014P10+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTTGG
JMFS094F04+           TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTT-G
                      ____________________________________________________________
consensus             TACAGATCATTTGCCTGAGAGTCCATTAGAATACGAATAGCGCAAGGCTTAGGGTTTTGG
 
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JMFS047F04+           GATTGGAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFS063B03+           GATTGTAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFS125E06+           GATTGTAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFS041A04+           GATTGTAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFS010E09+           GATTGGAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFS100A02+           GATTGGAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFF034F16+           GATTGGAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFF014P10+           GATTGGAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
JMFS094F04+           GATTGTAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
                      ____________________________________________________________
consensus             GATTGGAGCTTTCGAAAGTGGTGGTCTAGGATTAGGGTTGCAGGGGCGGAAAAGACTCGG
 
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JMFS047F04+           CGAGACGCCGACG                                               
JMFS063B03+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTT                      
JMFS125E06+           CGAGACGCCGACGAAGAGA                                         
JMFS041A04+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTT                      
JMFS010E09+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTTCGTTGATTTGT           
JMFS100A02+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTTCGTTGATTTGTTTTAAGCGTTT
JMFF034F16+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTTCGTTGATTTGTTTTAAGCGTTT
JMFF014P10+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTTCGTTGATTTGTTTTAAGCGTTT
JMFS094F04+           CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTTTGTTGATTTGTTTTAAGCGTTT
                      ____________________________________________________________
consensus             CGAGACGCCGACGAAGAGATGGCGAGTTGGTAAGACTTCGTTGATTTGTTTTAAGCGTTT
 
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JMFS100A02+           TACGTGAAT                                                   
JMFF034F16+           TACGTGAAT                                                   
JMFF014P10+           TACGTGAAT                                                   
JMFS094F04+           TCCGTGAATGAAACATATGACAGTAATGGATTGAACGAGCGGATTCGCGAGTCACGACAA
                      ____________________________________________________________
consensus             TACGTGAATGAAACATATGACAGTAATGGATTGAACGAGCGGATTCGCGAGTCACGACAA