| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS075D09 | Sequence | 510 | 000459 (13) | ref|XP_010665467.1| | 2e-19 | PREDICTED: TMV resistance protein N-like [Vitis vinifera] | |||||
| JMFS091B01 | Sequence | 596 | 000459 (13) | gb|AAL07542.1| | 3e-41 | resistance gene analog NBS7 [Helianthus annuus] | |||||
| JMSF001J13 | Sequence | 425 | 024072 | 763 | 000459 (13) | ref|XP_006342676.1| | 5e-50 | PREDICTED: TMV resistance protein N-like [Solanum tuberosum] | |||
| JMSF004C18 | Sequence | 333 | 000459 (13) | emb|CBI17021.3| | 3e-26 | unnamed protein product [Vitis vinifera] | 197 | 018108 | |||
| JMSF005C24 | Sequence | 427 | 000459 (13) | emb|CDP20523.1| | 2e-11 | unnamed protein product [Coffea canephora] | |||||
| JMSF011N01 | Sequence | 426 | 000459 (13) | ref|XP_009794563.1| | 2e-26 | PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris] | 769 | 004343 (3) | ref|XP_009628590.1| | 2e-09 | PREDICTED: TMV resistance protein N-like isoform X2 [Nicotiana tomentosiformis] |
| JMSF018F17 | Sequence | 474 | 019969 | emb|CDP07826.1| | 5e-06 | unnamed protein product [Coffea canephora] | 756 | 000459 (13) | ref|XP_006342676.1| | 6e-50 | PREDICTED: TMV resistance protein N-like [Solanum tuberosum] |
| JMSF018L01 | Sequence | 485 | 000459 (13) | ref|XP_009794563.1| | 3e-28 | PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris] | 735 | 013948 (4) | ref|XP_010245461.1| | 4e-35 | PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera] |
| JMSF024L20 | Sequence | 666 | 000459 (13) | ref|XP_006371051.1| | 4e-42 | hypothetical protein POPTR_0019s02990g, partial [Populus trichocarpa] gb|ERP4884 | 134 | 004343 (3) | |||
| JMSF030F23 | Sequence | 682 | 000459 (13) | ref|XP_006342676.1| | 2e-50 | PREDICTED: TMV resistance protein N-like [Solanum tuberosum] | 688 | 005721 (2) | ref|XP_002522452.1| | 6e-07 | nucleic acid binding protein, putative [Ricinus communis] gb|EEF39944.1| nucleic |
| JMSF032I24 | Sequence | 688 | 000459 (13) | ref|XP_006342676.1| | 3e-50 | PREDICTED: TMV resistance protein N-like [Solanum tuberosum] | 709 | 013948 (4) | ref|XP_010245461.1| | 3e-31 | PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera] |
| JMSF035A03 | Sequence | 261 | 000459 (13) | 719 | 013948 (4) | ref|XP_010245461.1| | 4e-33 | PREDICTED: topless-related protein 2-like isoform X2 [Nelumbo nucifera] | |||
| JMSF046H06 | Sequence | 692 | 000459 (13) | ref|XP_006342676.1| | 2e-50 | PREDICTED: TMV resistance protein N-like [Solanum tuberosum] | 789 | 005721 (2) | ref|XP_004508183.1| | 2e-08 | PREDICTED: topless-related protein 2-like [Cicer arietinum] |
This contig is upended
. : . : . : . : . : . :
rJMSF001J13- AGATAGGAAAGTGAAGTCTGATTACAA
____________________________________________________________
consensus AGATAGGAAAGTGAAGTCTGATTACAA
. : . : . : . : . : . :
rJMSF018F17- ACGGAATAACAGAAATAC
rJMSF001J13- AGAAGGATAACTGCCATCCTTTATACTAATGAGACAGTTATAACGGAATAACAGAAATAC
____________________________________________________________
consensus AGAAGGATAACTGCCATCCTTTATACTAATGAGACAGTTATAACGGAATAACAGAAATAC
. : . : . : . : . : . :
rJMSF018F17- AAATAAGGCTGGAAAAGACAAGATTGCCCTCAGCTTCATTCTTCATCCTTTCTCATTGGA
rJMSF001J13- AAATAAGGCTGGAAAAGACAAGATTGCCCTCAGCTTCATTCTTCATCCTTTCTCATTGGA
____________________________________________________________
consensus AAATAAGGCTGGAAAAGACAAGATTGCCCTCAGCTTCATTCTTCATCCTTTCTCATTGGA
. : . : . : . : . : . :
rJMSF018F17- CATAGCAGTATCACATCTATCCTTCATCACGATGCATGATTCAATCGAGCATGTATGTCG
JMFS075D09+ CGATGCATGATTCAATCGAGCATGTATGTCG
rJMSF001J13- CATAGCAGTATCACATCTATCCTTCATCACGATGCATGATTCAATCGAGCATGTATGTCG
JMSF030F23+ CGATGCATGATTCAATCGAGCATGTACGTCG
JMSF004C18+ TTCAATCGAGCATGTATGTCG
JMSF046H06+ CGATGCATGATTCAATCGAGCATGTACGTCG
JMSF032I24+ CGATGCATGATTCAATCGAGCATGTATGTCG
____________________________________________________________
consensus CATAGCAGTATCACATCTATCCTTCATCACGATGCATGATTCAATCGAGCATGTATGTCG
. : . : . : . : . : . :
rJMSF018F17- GCTGCAACGTTTTCTGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
JMFS075D09+ GCTGCAACGTTTTCTGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
rJMSF001J13- GCTGCAACGTTTTCTGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
JMSF030F23+ GCAGCAACAT-TTCAGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
JMSF004C18+ GCAGCAACATTTTCAGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
JMSF046H06+ GCAGCAACATTTTCAGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
JMSF032I24+ GCAGCAACATNTTCAGCACATGNTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
JMSF024L20+ TCGTTATAGTCATTCTTCAAATGATGC
____________________________________________________________
consensus GCTGCAACGTTTTCTGCACATGTTGCTTCGTATTCGTTATAGTCATTCTTCAAATGATAC
. : . : . : . : . : . :
rJMSF018F17- CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTGTTACCTTCTCATCATCC
JMFS075D09+ CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTGTTACCTTCTCATCATCC
rJMSF001J13- CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTGTTACCTTCTCATCATCC
JMSF030F23+ CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTCTTACCTTCTCATCATCC
JMSF004C18+ CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTCTTACCTTCTCATCATCC
JMSF046H06+ CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTCTTACCTTCTCATCATCC
JMSF032I24+ CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTCTTACCTTCTCATCATCC
JMSF024L20+ CCTTTGAGTTCGCCAGCCTTTTTTAAGGCTTTCTTCCATCTTTTTACCTTCTCCTCCT--
____________________________________________________________
consensus CCTTTGAGTTGGCCAGCCTTGTTTAAGGCTTCCTTCCATCTTGTTACCTTCTCATCATCC
. : . : . : . : . : . :
rJMSF018F17- TTGCCAATTTTTTCATGCAATTCTTTGAACGAATCTTCAAAACTTCCTTTTTGATTCCGG
JMFS075D09+ TTGCCAATTTTTTCATGCAATTCTTTGAACGAATCTTCAAAACTTCCTTTTTGATTCCGG
rJMSF001J13- TTGCCAATTTTTTCATGCAATTCTTTGAACGAATCTTCAAAACTTCCTTTTTGATTCCGG
JMSF030F23+ TTGCCAATTTTTTCATGCAATTCTTTGAACGAATTTTCATAACTTCCTTTTTGATTCCGG
JMSF004C18+ TTGCCAATTTTTTCATGCAATTCTTTGAACGAATTTTCATAACTTCCTTTTTGATTCCGG
JMSF046H06+ TTGCCAATTTTTTCATGCAATTCTTTGAACGAATTTTCATAACTTCCTTTTTGATTCCGG
JMSF032I24+ TTGCCAATTTTTTCATGCAATTCTTTGAACGAATTTTCATAACTTCCTTTTTGATTCCGG
JMSF024L20+ ----CAAATCTTTCAACCGATTCTTTGAACGAATTTCCAAAACTTCCTTCCTGTTTCCGG
JMFS091B01+ CAATTTTNTCATGCAATTCTTTGAACGAATTTTCATAACTTCCTTTTTGATTCCGG
____________________________________________________________
consensus TTGCCAATTTTTTCATGCAATTCTTTGAACGAATTTTCATAACTTCCTTTTTGATTCCGG
. : . : . : . : . : . :
rJMSF018F17- ACATCTGTAGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGGTCCTCCAACTTTTCT
JMFS075D09+ ACATCTGTAGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGGTCCTCCAACTTTTCT
rJMSF001J13- ACATCTGTAGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGGTCCTCCAACTTTTCT
JMSF030F23+ ACATCTGTGGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGCTCCTTCAACTTTTCT
JMSF004C18+ ACATCTGTGGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGCTCCTTCAACTTTTCT
JMSF046H06+ ACATCTGTGGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGCTCCTTCAACTTTTCT
JMSF032I24+ ACATCTGTGGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGCTCCTTCAACTTTTCT
JMSF024L20+ ACATCTGAAGGTTCTACGTGGTAGAAAATTGGCACCACAATTTGCTC------CTTTTTT
JMFS091B01+ ACATCTGTGGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGCTCCTTCAACTTTTCT
____________________________________________________________
consensus ACATCTGTGGGCTCCACGTGGTAGAAAATTGGCACCACAATTTGCTCCTTCAACTTTTCT
. : . : . : . : . : . :
rJMSF018F17- TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
JMFS075D09+ TGGCATTCCATGACTGTTGCAAG
rJMSF001J13- TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
JMSF030F23+ TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
JMSF004C18+ TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGC
JMSF046H06+ TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
JMSF032I24+ TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
JMSF011N01+ CATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGAAGAAGCATAGCCTTTG
JMSF024L20+ TGGCATTCCATGACTGTTGCAAGTCCTTCCAAACACCATTTTGAAGAAGCATAGCCTTTG
JMSF018L01+ TTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
JMFS091B01+ TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
____________________________________________________________
consensus TGGCATTCCATGACTGTTGCAAGTTCTTCCAAACACCATTTTGACGAAGCATAGCCTTTG
. : . : . : . : . : . :
rJMSF018F17- GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
rJMSF001J13- GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
JMSF030F23+ GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
JMSF046H06+ GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
JMSF032I24+ GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
JMSF011N01+ GAGAAGACTGGGATAAAAAACTTTGATTCTCGAATAGCATTTGGTAGGCTCAGAGAGATG
JMSF024L20+ GAGAAGACTGGGATAAAAAACTTTGATTCTCGAATAGCATTTGGTAGGCTCAGAGAGATG
JMSF018L01+ GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
JMSF005C24+ TGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
JMFS091B01+ GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
____________________________________________________________
consensus GAGAAGACTGCGATAAAAAACTTTGATTCCCGAATAGCATTTGGTAGGCTCTGAGAGATG
. : . : . : . : . : . :
rJMSF018F17- CAGTCTCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGCGAATCCCTTTACGTTCTAAC
rJMSF001J13- CAGTCTCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGCGAATCCCTTTACGTTCTAAC
JMSF030F23+ CAGTCCCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGTGAATCCCTCTACGTTCTAAC
JMSF046H06+ CAGTCCCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGTGAATCCCTCTACGTTCTAAC
JMSF032I24+ CAGTCCCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGTGAATCCCTCTACGTTCTAAC
JMSF011N01+ CAGTCTCCTTTCTCCAGTCGATTGTCATCTTTGAAAGTGCGAATCCCTCTACATTCTAAC
JMSF024L20+ CAGTCTCCTTTCTCCAGTCGATTGTCATCTTTGAAAGTGCGAATCCCTCTACATTCTAAC
JMSF018L01+ CAGTCCCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGTGAATCCCTCTACGTTCTAAC
JMSF005C24+ CAGTCCCCTTTCTCCAGTCGATCGTCATC-TTGAAAGTGTGAATCCCTCTACGTTCTAAC
JMFS091B01+ CAGTCCCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGTGAATCCCTCTACGTTCTAAC
____________________________________________________________
consensus CAGTCCCCTTTCTCCAGTCGATCGTCATCTTTGAAAGTGTGAATCCCTCTACGTTCTAAC
. : . : . : . : . : . :
rJMSF018F17- GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
rJMSF001J13- GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
JMSF030F23+ GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
JMSF046H06+ GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
JMSF032I24+ GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
JMSF011N01+ GACTCATAAAGGACATCTATAAAAGTTTTACGAGTATCTGGACCTCTAAAACTCAAGAAA
JMSF024L20+ GACTCATAAAGGACATCTATAAAAGTTTTACGAGTATCTGGACCTCTAAAACTCAAGAAA
JMSF018L01+ GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
JMSF005C24+ GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
JMSF035A03+ AACTCAAGAAA
JMFS091B01+ GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
____________________________________________________________
consensus GATTCAAAAAGGAAATCTATAAAAGTTTTACGAACATCTGGACCTCGAAAACTCAAGAAA
. : . : . : . : . : . :
rJMSF018F17- ACATCATACGTCCATCCCTGAGGGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
rJMSF001J13- ACATCATACGTCCATCCCTGAGGGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMSF030F23+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMSF046H06+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMSF032I24+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMSF011N01+ ACATCATAGGTCCATCCCTGAGTGGATGGCGAAGCAGTAGCAGAAGAAGAGGTAGAAGCC
JMSF024L20+ ACATCATAGGCCCATCCCTGAGTGGATGGCGAAGCAGTAGCAGAAGAAGAGGTAGAAGCC
JMSF018L01+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMSF005C24+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMSF035A03+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
JMFS091B01+ ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
____________________________________________________________
consensus ACATCATACGTCCATCCCTGAGTGGATGGCGAAGCAGTAACAGAAGAAGAGGTAGAAGCC
. : . : . : . : . : . :
rJMSF018F17- AT
rJMSF001J13- ATATATTGATATGATA
JMSF030F23+ ATCTATGAAGCCATATATTGATATGGCCGGAATTCAATCGGCCGGATTCCTCTAACACAA
JMSF046H06+ ATCTATGAAGCCATATATTGATATGGCCGGAATTCAATCGGCCGGATTCCTCTAACACAA
JMSF032I24+ ATCTATGAAGCCATATATTGATATGGCCGGAATTCAATCGGCCGGATTCCTCTAACACAA
JMSF011N01+ ATCTATCAAGCCATATATTGATATGACCGGAATTCGATCGGCCGGATTCCTCTAACACAT
JMSF024L20+ ATCTATCAAGCCATATATTGATATGACCGGAATTCGATCGGCCGGATTCCTCTAACACAT
JMSF018L01+ AT
JMSF005C24+ AT
JMSF035A03+ AT
JMFS091B01+ ATCTATGAAGCCATATATTGATATGGCCGGAATTCAATCGGCCGGATTCCTCTAACACAA
____________________________________________________________
consensus ATCTATGAAGCCATATATTGATATGGCCGGAATTCAATCGGCCGGATTCCTCTAACACAA
. : . : . : . : . : . :
JMSF030F23+ GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGAT
JMSF046H06+ GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGAT
JMSF032I24+ GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGAT
JMSF011N01+ GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGATGAACAAA
JMSF024L20+ GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGATGAACAAAC
JMFS091B01+ GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGATGAACAAACAAAAC
____________________________________________________________
consensus GCAGGGAAGTAATTAGAAGGGAGATTGAAAAGCATATGAAATATGATGAACAAACAAAAC
. : . : . : . : . : . :
JMFS091B01+ TACAATAGGCGTGACTTTGTACAAGTCGTCTCAGAAAATTTCATCGGATTCTTCAGGTAG
____________________________________________________________
consensus TACAATAGGCGTGACTTTGTACAAGTCGTCTCAGAAAATTTCATCGGATTCTTCAGGTAG