Contig 000456:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS081D10Sequence603000456 (2)gb|EYU21278.1|7e-11hypothetical protein MIMGU_mgv1a001736mg [Erythranthe guttata]
JMSF043D05Sequence721000456 (2)ref|XP_009759587.1|1e-39PREDICTED: AT-rich interactive domain-containing protein 4-like [Nicotiana sylv241007210 (2)

Alignment

This contig is upended


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JMSF043D05+                                                   CTGGGATCTCCAAGTAAACT
                      ____________________________________________________________
consensus                                                     CTGGGATCTCCAAGTAAACT
 
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JMSF043D05+           GTGGTTAGTGATCTGGCACTTGAAAGCCCAGAAATGGCTTCTTCAGAAGACAAGTTAAAA
                      ____________________________________________________________
consensus             GTGGTTAGTGATCTGGCACTTGAAAGCCCAGAAATGGCTTCTTCAGAAGACAAGTTAAAA
 
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JMSF043D05+           CCTTCCCATACTAGTGAACTAAATTCATCGTTTGGAAGCTGATCTCCTTGCAAAAAGACT
                      ____________________________________________________________
consensus             CCTTCCCATACTAGTGAACTAAATTCATCGTTTGGAAGCTGATCTCCTTGCAAAAAGACT
 
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JMSF043D05+           ATGTTTGGCTTCACTGTATCCAGAGCCTTACGAAATTCATCTGTGCTTGGGTTTTTTAGA
JMFS081D10+                                                                    AGA
                      ____________________________________________________________
consensus             ATGTTTGGCTTCACTGTATCCAGAGCCTTACGAAATTCATCTGTGCTTGGGTTTTTTAGA
 
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JMSF043D05+           AGTTGAACCTCCAAACGACCAGATGATGCTATCTCTGAAGTGGGATATCCTGGCCTCTCA
JMFS081D10+           AGTTGAACCTCCAAACGACCAGATGATGCTATCTCTGAAGTGGGATATCCTGGCCTCTCA
                      ____________________________________________________________
consensus             AGTTGAACCTCCAAACGACCAGATGATGCTATCTCTGAAGTGGGATATCCTGGCCTCTCA
 
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JMSF043D05+           TCTGCAACATCTTGCTTGTATATATTTTCAGCAGCTCTACCACACACAACTGCAAGGAGA
JMFS081D10+           TCTGCAACATCTTGCTTGTATATATTTTCAGCAGCTCTACCACACACAACTGCAAGGAGA
                      ____________________________________________________________
consensus             TCTGCAACATCTTGCTTGTATATATTTTCAGCAGCTCTACCACACACAACTGCAAGGAGA
 
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JMSF043D05+           CTGCAACTATGTTTGGAAGTCCCTTGAACAGAATACATCAGATGTTGTCTCCTGACTGCC
JMFS081D10+           CTGCAACTATGTTTGGAAGTCCCTTGAACAGAATACATCAGATGTTGTCTCCTGACTGCC
                      ____________________________________________________________
consensus             CTGCAACTATGTTTGGAAGTCCCTTGAACAGAATACATCAGATGTTGTCTCCTGACTGCC
 
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JMSF043D05+           AACTTGTTTGAACTACAGAACCAATCAAGCTCCTCACTTTATGATGTGAGAGTATGGAAA
JMFS081D10+           AACTTGTTTGAACTACAGAACCAATCAAGCTCCTCACTTTATGATGTGAGAGTATGGAAA
                      ____________________________________________________________
consensus             AACTTGTTTGAACTACAGAACCAATCAAGCTCCTCACTTTATGATGTGAGAGTATGGAAA
 
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JMSF043D05+           TCTGCAATTTCTGCTACATCAAACACTCCAAAGCTACTCAAACCCAATATAGAATCCTGG
JMFS081D10+           TCTGCAATTTCTGCTACATCAAACACTCCAAAGCTACTCAAACCCAATATAGAATCCTGG
                      ____________________________________________________________
consensus             TCTGCAATTTCTGCTACATCAAACACTCCAAAGCTACTCAAACCCAATATAGAATCCTGG
 
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JMSF043D05+           ACTTGCATAACCAATCACCATGCCACCAAGACTCCCTTGAACTCCGACCCAGATGAGAAA
JMFS081D10+           ACTTGCATAACCAATCACCATGCCACCAAGACTCCCTTGAACTCCGACCCAGATGAGAAA
                      ____________________________________________________________
consensus             ACTTGCATAACCAATCACCATGCCACCAAGACTCCCTTGAACTCCGACCCAGATGAGAAA
 
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JMSF043D05+           ACAGAGGAATCCGAAGAACCCAAAAGGAGAAATCAACAACGATCGAGGGTCCACGTCACT
JMFS081D10+           ACAGAGGAATCCGAAGAACCCAAAAGGAGAAATCAACAACGATCGAGGGTCCACGTCACT
                      ____________________________________________________________
consensus             ACAGAGGAATCCGAAGAACCCAAAAGGAGAAATCAACAACGATCGAGGGTCCACGTCACT
 
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JMSF043D05+           TGGAAGCTCCAAATCCACAAAAAGAATGCGTACGAGTAAGGAATGAAAGAAACCCTAATA
JMFS081D10+           TGGAAGCTCCAAATCCACAAAAAGAATGCGTACGAGTAAGGAATGAAAGAAACCCTAATA
                      ____________________________________________________________
consensus             TGGAAGCTCCAAATCCACAAAAAGAATGCGTACGAGTAAGGAATGAAAGAAACCCTAATA
 
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JMSF043D05+           CCCTATTCTTAAAAATCTAACCATCCATCCACCCACCCATC                   
JMFS081D10+           CCCTATTCTTAAAAATCTAACCATCCATCCACCCATCCATCCAATCAATGTGGAAAAAGG
                      ____________________________________________________________
consensus             CCCTATTCTTAAAAATCTAACCATCCATCCACCCATCCATCCAATCAATGTGGAAAAAGG
 
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JMFS081D10+           AAAATAGAAAAGAAAAGAACAAAAAAACGGTGATTTAAGAATCTTTCTTTCACATATATC
                      ____________________________________________________________
consensus             AAAATAGAAAAGAAAAGAACAAAAAAACGGTGATTTAAGAATCTTTCTTTCACATATATC