Contig 000454:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS078F12Sequence415000454 (4)gb|KDO49596.1|7e-11hypothetical protein CISIN_1g0026961mg, partial [Citrus sinensis] gb|KDO49597.1|
JMSF003J24Sequence295001970 (37)ref|XP_009622441.1|1e-09PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot698000454 (4)emb|CDP15868.1|2e-77unnamed protein product [Coffea canephora]
JMSF013C16Sequence453001970 (37)ref|XP_009622441.1|6e-31PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot697000454 (4)emb|CDP15868.1|4e-78unnamed protein product [Coffea canephora]
JMSF013M04Sequence509001970 (37)ref|XP_009622441.1|1e-40PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Nicot700000454 (4)emb|CDP15868.1|4e-76unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF013C16+                                      TGTCCGAATCGCTCAAGGTCTTGTCCATCTAG
rJMSF003J24+                                          CGAATCGCTCAAGGTCTTGTCCATCTAG
rJMSF013M04+                                          CGAATCGCTCAAGGTCTTGTCCATCTAG
                      ____________________________________________________________
consensus                                         TGTCCGAATCGCTCAAGGTCTTGTCCATCTAG
 
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rJMSF013C16+          GGAAAGGACTGTTAACCCTCTCACCTTACCATTCTGAACGGTTCTTATTATCTCCGACTG
rJMSF003J24+          GGAAAGGACTGTTAACCCTCTCACCTTACCATTCTGAACGGTTCTTATTATCTCCGACTG
rJMSF013M04+          GGAAAGGACTGTTAACCCTCTCACCTTACCATTCTGAACGGTTCTTATTATCTCNGACTG
                      ____________________________________________________________
consensus             GGAAAGGACTGTTAACCCTCTCACCTTACCATTCTGAACGGTTCTTATTATCTCCGACTG
 
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rJMSF013C16+          CTTTGGCTGGGCTCATAACTATGCTGCATGCTTGTCTTGATATGAAAGCTATCATTTTGG
rJMSF003J24+          CTTTGGCTGGGCTCATAACTATGCTGCATGCTTGTCTTGATATGAAAGCTATCATTTTGG
rJMSF013M04+          CTTTGGCTGGGCTCATAACTATGCTGCATGCTTGTCTTGATATGAAAGCTATCATTTTGG
                      ____________________________________________________________
consensus             CTTTGGCTGGGCTCATAACTATGCTGCATGCTTGTCTTGATATGAAAGCTATCATTTTGG
 
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rJMSF013C16+          GAAAATACCATTATGTGCTTTATTTCCTTACATTGGCAATGCAGCCGAGGATGCTAATGA
rJMSF003J24+          GAAAATACCATTATGTGCTTTATTTCCTTACATTGGCAATGCAGCCGAGGATGCTAATGA
rJMSF013M04+          GAAAATACCATTATGTGCTTTATTTCCTTACATTGGCAATGCAGCCGAGGATGCTAATGA
                      ____________________________________________________________
consensus             GAAAATACCATTATGTGCTTTATTTCCTTACATTGGCAATGCAGCCGAGGATGCTAATGA
 
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rJMSF013C16+          CAGTAGACGAAAACTTGAAACCATTGTCTGTGCCTGTACGTGTTGGCCAAGCTGTTGACG
rJMSF003J24+          CAGTAGACGAAAACTTGAAACCATTGTCTGTGCCTGTACGTGTTGGCCAAGCTGTTGACG
rJMSF013M04+          CAGTAGACGAAAACTTGAAACCATTGTCTGTGCCTGTACGTGTTGGCCAAGCTGTTGACG
                      ____________________________________________________________
consensus             CAGTAGACGAAAACTTGAAACCATTGTCTGTGCCTGTACGTGTTGGCCAAGCTGTTGACG
 
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rJMSF013C16+          TTGTTGGTCAAGCAGGTCGACCCAAGACAATCACGGGATTCCAAACCCACTCAACCCCTG
rJMSF003J24+          TTGTTGGTCAAGCAGGTCGACCCAAGACAATCACGGGATTCCAAACCCACTCAACCCCTG
rJMSF013M04+          TTGTTGGTCAAGCAGGTCGACCCAAGACAATCACGGGATTCCAAACCCACTCAACCCCTG
                      ____________________________________________________________
consensus             TTGTTGGTCAAGCAGGTCGACCCAAGACAATCACGGGATTCCAAACCCACTCAACCCCTG
 
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rJMSF013C16+          TTCTCCTCTCTGCCGGTGATAGAGCAGAACTTGCCACTGAAAAATATATCCCACTATCAC
rJMSF003J24+          TTCTCCTCTCTGCCGGTGATAGAGCAGAACTTGCCACTGAAAAATATATCCCACTATCAC
rJMSF013M04+          TTCTCCTCTCTGCCGGTGATAGAGCAGAACTTGCCACTGAAAAATATATCCCACTATCAC
JMFS078F12-                               AGAGGAGAACTTGCCACTGAAAAATATATCCCACTATCAC
                      ____________________________________________________________
consensus             TTCTCCTCTCTGCCGGTGATAGAGCAGAACTTGCCACTGAAAAATATATCCCACTATCAC
 
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rJMSF013C16+          CCGTTCTTGAAGGCTTTGTCATCTTAAAGGAGAACCCGGAGTACAGAGAAGACCATTAAT
rJMSF003J24+          CCGTTCTTGAAGGCTTTGTCATCTTAAAGGAGAACCCGGAGTACAGAGAAGACCATTAAT
rJMSF013M04+          CCGTTCTTGAAGGCTTTGTCATCTTAAAGGAGAACCCGGAGTACAGAGAAGACCATTAAT
JMFS078F12-           CCGTTCTTGAAGGCTTTGTCATCTTAAAGGAGAACCCGGAGTACAGAGAAGACCATTAAT
                      ____________________________________________________________
consensus             CCGTTCTTGAAGGCTTTGTCATCTTAAAGGAGAACCCGGAGTACAGAGAAGACCATTAAT
 
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rJMSF013C16+          GTCCATTGAACGAGTGCTTATAAAGTCTGAGAACTCCAAAAATGCTGGCCATGGCTGTCT
rJMSF003J24+          GTCCATTGAACGAGTGCTTATAAAGTCTGAGAACTCCAAAAATGCTGGCCATGGCTGTCT
rJMSF013M04+          GTCCATTGAACGAGTGCTTATAAAGTCTGAGAACTCCAAAAATGCTGGCCATGGCTGTCT
JMFS078F12-           GTCCATTGAACGAGTGCTTATAAAGTCTGAGAACTCCAAAAATGCTGGCCATGGCTGTCT
                      ____________________________________________________________
consensus             GTCCATTGAACGAGTGCTTATAAAGTCTGAGAACTCCAAAAATGCTGGCCATGGCTGTCT
 
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rJMSF013C16+          TCTCCAGGATCAACCCACTGTCCAACGAGGTTGCATGGCAGTTTCAGATTTAAATGAACT
rJMSF003J24+          TCTCCAGGATCAACCCACTGTCCAACGAGGTTGCATGGCAGTTTCAGATTTAAATGAACT
rJMSF013M04+          TCTCCAGGATCAACCCACTGTCCAACGAGGTTGCATGGCAGTTTCAGATTTAAATGAACT
JMFS078F12-           TCTCCAGGATCAACCCACTGTCCAACGAGGTTGCATGGCAGTTTCAGATTTAAATGAACT
                      ____________________________________________________________
consensus             TCTCCAGGATCAACCCACTGTCCAACGAGGTTGCATGGCAGTTTCAGATTTAAATGAACT
 
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rJMSF013C16+          TCTGAGAAGTTGGCATTCTAGACTGTCTGTTTTAATGTCTAATTACGTGTATACGAAGCA
rJMSF003J24+          TCTGAGAAGTTGGCATTCTAGACTGTCTGTTTTAATGTCTAATTACGTGTATACGAAGCA
rJMSF013M04+          TCTGAGAAGTTGGCATTCTAGACTGTCTGTTTTAATGTCTAATTACGTGTATACGAAGCA
JMFS078F12-           TCTGAGAAGTTGGCATTCTAGACTGTCTGTTTTAATGTCTAATTACGTGTATACGAAGCA
                      ____________________________________________________________
consensus             TCTGAGAAGTTGGCATTCTAGACTGTCTGTTTTAATGTCTAATTACGTGTATACGAAGCA
 
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rJMSF013C16+          ATGCAACAAAGCTATTAGAGAAGGCAGAGACGTACTTTTGAGTTTTGAATGGATTTTCTG
rJMSF003J24+          ATGCAACAAAGCTATTAGAGAAGGCAGAGACGTACTTTTGAGTTTTGAATGGATTTTCTG
rJMSF013M04+          ATGCAACAAAGCTATTAGAGAAGGCAGAGACGTACTTTTGAGTTTTGAATGGATTTTCTG
JMFS078F12-           ATGCAACAAAGCTATTAGAGAAGGCAGAGACGTACTTTTGAGTTTTGAATGGATTTTCTG
                      ____________________________________________________________
consensus             ATGCAACAAAGCTATTAGAGAAGGCAGAGACGTACTTTTGAGTTTTGAATGGATTTTCTG
 
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rJMSF013C16+          ACGAT                                                       
rJMSF003J24+          ACGAT                                                       
rJMSF013M04+          ACGAT                                                       
JMFS078F12-           ACGATTGTTTTCGCACATTGAACGTTCTTTAATGTTTATCCATCATTCGTTGACTAATTT
                      ____________________________________________________________
consensus             ACGATTGTTTTCGCACATTGAACGTTCTTTAATGTTTATCCATCATTCGTTGACTAATTT