| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS026A02 | Sequence | 612 | 000449 (7) | ref|XP_006344239.1| | 2e-102 | PREDICTED: auxin efflux carrier component 3-like [Solanum tuberosum] | |||||
| JMFS045G08 | Sequence | 626 | 000449 (7) | ref|XP_009601548.1| | 3e-110 | PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb| | |||||
| JMFS072E11 | Sequence | 626 | 000449 (7) | ref|XP_010320545.1| | 8e-107 | PREDICTED: auxin efflux facilitator SlPIN4 isoform X1 [Solanum lycopersicum] | |||||
| JMFS076A07 | Sequence | 656 | 000449 (7) | ref|XP_010320545.1| | 6e-120 | PREDICTED: auxin efflux facilitator SlPIN4 isoform X1 [Solanum lycopersicum] | |||||
| JMFS078C11 | Sequence | 625 | 000449 (7) | ref|XP_009601548.1| | 3e-110 | PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb| | |||||
| JMFS123G02 | Sequence | 576 | 000449 (7) | ref|XP_010320545.1| | 2e-93 | PREDICTED: auxin efflux facilitator SlPIN4 isoform X1 [Solanum lycopersicum] | |||||
| JMSF004D09 | Sequence | 280 | 000449 (7) | ref|XP_009104930.1| | 2e-23 | PREDICTED: auxin efflux carrier component 3 [Brassica rapa] | |||||
This contig is upended
. : . : . : . : . : . :
JMFS076A07+ TGACCGTCCAAAGAAACCACGTCG
____________________________________________________________
consensus TGACCGTCCAAAGAAACCACGTCG
. : . : . : . : . : . :
JMFS076A07+ GACTCCACCTTAAACTCCACAATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
JMFS078C11+ AATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
JMFS045G08+ AATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
JMFS026A02+ TCCATTATCAGC
JMFS072E11+ TCTCCGGGAACTGCTCCATTATCAGC
____________________________________________________________
consensus GACTCCACCTTAAACTCCACAATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
. : . : . : . : . : . :
JMFS076A07+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS078C11+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS045G08+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS026A02+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS123G02+ ACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS072E11+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
____________________________________________________________
consensus ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
. : . : . : . : . : . :
JMFS076A07+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS078C11+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS045G08+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS026A02+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS123G02+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS072E11+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
____________________________________________________________
consensus AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
. : . : . : . : . : . :
JMFS076A07+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS078C11+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS045G08+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS026A02+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS123G02+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS072E11+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
____________________________________________________________
consensus GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
. : . : . : . : . : . :
JMFS076A07+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS078C11+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS045G08+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS026A02+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS123G02+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS072E11+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
____________________________________________________________
consensus TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
. : . : . : . : . : . :
JMFS076A07+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS078C11+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS045G08+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS026A02+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS123G02+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS072E11+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
____________________________________________________________
consensus TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
. : . : . : . : . : . :
JMFS076A07+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS078C11+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS045G08+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS026A02+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS123G02+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMSF004D09+ CGACGAAGCGGTTTATGCCGGAG
JMFS072E11+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
____________________________________________________________
consensus ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
. : . : . : . : . : . :
JMFS076A07+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS078C11+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS045G08+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS026A02+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS123G02+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMSF004D09+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS072E11+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
____________________________________________________________
consensus CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
. : . : . : . : . : . :
JMFS076A07+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS078C11+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS045G08+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS026A02+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS123G02+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMSF004D09+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTT
JMFS072E11+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
____________________________________________________________
consensus ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
. : . : . : . : . : . :
JMFS076A07+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS078C11+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS045G08+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS026A02+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS123G02+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS072E11+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
____________________________________________________________
consensus CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
. : . : . : . : . : . :
JMFS076A07+ TGATTGACACTTTGTTCTCTGAACCAGTGAAA
JMFS078C11+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCA
JMFS045G08+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAG
JMFS026A02+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGAT
JMFS123G02+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGAT
JMFS072E11+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGATAG
____________________________________________________________
consensus TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGATAG