Contig 000447:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS071E09Sequence444000447 (4)ref|XP_008389816.1|6e-22PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]
JMSF023A15Sequence653009044 (4)ref|XP_008389816.1|4e-33PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]652000447 (4)ref|XP_007225202.1|1e-60hypothetical protein PRUPE_ppa002076mg [Prunus persica] gb|EMJ26401.1| hypotheti
JMSF031K09Sequence658009044 (4)ref|XP_008389816.1|5e-35PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]677000447 (4)ref|XP_007225202.1|2e-56hypothetical protein PRUPE_ppa002076mg [Prunus persica] gb|EMJ26401.1| hypotheti
JMSF037F12Sequence646009044 (4)ref|XP_008389816.1|4e-33PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]632000447 (4)ref|XP_007225202.1|8e-66hypothetical protein PRUPE_ppa002076mg [Prunus persica] gb|EMJ26401.1| hypotheti

Alignment

This contig is upended


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rJMSF037F12+                                            CTGTTGCATGAACCCGAAGCACCCNC
                      ____________________________________________________________
consensus                                               CTGTTGCATGAACCCGAAGCACCCNC
 
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rJMSF037F12+          AGGACGAAGGAGGGACTTTGTGCCCTCAGCAGATCCGGGATCAAGGTTGCCACACATAAA
rJMSF023A15+             ACGAAGGAGGGACTTTGTGCCCTCAGCAGATCCGGGATCAAGGTTGCCACACATAAA
rJMSF031K09+                     GGGACTTTGTGCCCTCAGCAGATCCGGGATCAAGGTTGCCACACATAAA
                      ____________________________________________________________
consensus             AGGACGAAGGAGGGACTTTGTGCCCTCAGCAGATCCGGGATCAAGGTTGCCACACATAAA
 
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rJMSF037F12+          TGTTAGACCATTTTCAAATCCACCTAGCAAGGAAACGTTTTCTACATTGGACCTTGTATC
rJMSF023A15+          TGTTAGACCATTTTCAAATCCACCTAGCAAGGAAACGTTTTNTACATTGGACCTTGTATC
rJMSF031K09+          TGTTAGACCATTTTCAAATCCNCCTAGCAAGGAAACGTTTTCTACATTGGACCTTGTATC
                      ____________________________________________________________
consensus             TGTTAGACCATTTTCAAATCCACCTAGCAAGGAAACGTTTTCTACATTGGACCTTGTATC
 
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rJMSF037F12+          AGCAGAGAAGGTCGAGTTTGTTNTCATTATAGCNCCAGTGGACTCATCCTACCATCTGGC
rJMSF023A15+          AGCAGAGAAGGTCGAGTTTGTTCTCATTATAGCNCCNGNGGACTCATCCTACCATNTGGC
rJMSF031K09+          AGCAGAGAAGGTCGAGTTTGTTNTCATTATAGCACCAGTGGACTCATCCTACCATNTGGC
                      ____________________________________________________________
consensus             AGCAGAGAAGGTCGAGTTTGTTCTCATTATAGCACCAGTGGACTCATCCTACCATCTGGC
 
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rJMSF037F12+          TNTGGGGGCATTCCAGGTTGCTGAGGAATGTAAAGTTNTTTTAAAGGTATGCGTGATGTG
rJMSF023A15+          TNTGGGGGCATTCCAGGTTGCTGAGGAANGTAAAGTTNTTTTAAAGGTATGCGTGATGTG
rJMSF031K09+          TCTGGGGGCATTCCAGGTTGNTGAGGAATGTAAAGTTNTTTTAAAGGTATGCGTGATGTG
                      ____________________________________________________________
consensus             TCTGGGGGCATTCCAGGTTGCTGAGGAATGTAAAGTTNTTTTAAAGGTATGCGTGATGTG
 
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rJMSF037F12+          GGCAGGAGAAACTATTGCGGGACCCAACAGAAGCAAAGCTGCATTGTTACCTTGGGAGAA
rJMSF023A15+          GGCNGGAGAAACTATTGCGGGACCCAACAGAAGCAAAGCTGCATTGTTACCTTGGGAGAA
rJMSF031K09+          GGCAGGAGAAACTATTGCGGGACCCAACAGAAGCAAAGCTGCATTGTTACCTTGGGAGAA
                      ____________________________________________________________
consensus             GGCAGGAGAAACTATTGCGGGACCCAACAGAAGCAAAGCTGCATTGTTACCTTGGGAGAA
 
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rJMSF037F12+          TTTNGTAGATGTTTTGGAAGTTAAGAGAGCNCCAAATTNGTNGTCTTGGTGGGATGTNTG
rJMSF023A15+          TTTNGTAGATGTTTTGGAAGTTAAGAGAGCNCCAAATTNGTCGTCTTGGTGGGATGTNTG
rJMSF031K09+          TTTNGTAGATGTTTTGGAAGTTAAGAGAGCNCCAAATTNGTCGTCTTGGTGGGATGTNTG
JMFS071E09-               GTAGATGTTTTGGAAGTTAAGAGAGCACCAAATTCGTCGTCTTGGTGGGATGTCTG
                      ____________________________________________________________
consensus             TTTNGTAGATGTTTTGGAAGTTAAGAGAGCACCAAATTCGTCGTCTTGGTGGGATGTCTG
 
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rJMSF037F12+          CCAGATGACAGACAGGGGAGCCATTTTAGTGAGGCCCGACGAGCATATTGCCTGGCGCAC
rJMSF023A15+          CCAGATGACAGACNGGGGAGCCNTTTTAGTGAGGCCCGACGAGCATATTGCCTGGCGCAC
rJMSF031K09+          CCNGATGACAGACAGGGGAGCCNTTTTAGTGAGGCCCGACGAGCATATTGCCTGGCGCNC
JMFS071E09-           CCAGATGACAGACAGGGGAGCCATTTTAGTGAGGCCCGACGAGCATATTGCCTGGCGCAC
                      ____________________________________________________________
consensus             CCAGATGACAGACAGGGGAGCCATTTTAGTGAGGCCCGACGAGCATATTGCCTGGCGCAC
 
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rJMSF037F12+          AAAGTCNCAACTTGCTGCTGATGCCNCAACTGAGATGAGAAAAGTTTTTCGCNCCNTCCT
rJMSF023A15+          AAAGTCNCAACTTGCTGCTGATGCCNCAACTGAGATGAGAAAAGTTTTTCGCNCCNTCCT
rJMSF031K09+          AAAGTCNCAACTTGCTGCTGATGCCNCAACTGAGATGAGAAAAGTTTTTCGCNCCNTCCT
JMFS071E09-           AAAGTCACAACTTGCTGCTGATGCCACAACTGAGATGAGAAAAGTTTTTCGCACCATCCT
                      ____________________________________________________________
consensus             AAAGTCACAACTTGCTGCTGATGCCACAACTGAGATGAGAAAAGTTTTTCGCACCATCCT
 
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rJMSF037F12+          TGGATNTCAATGACNGATGATGATACATACTCCCTAGTCCCTCCCNTTTTTTTTTTTCTT
rJMSF023A15+          TGGATNTCAATGACNGATGATGATACATACTCCGTAGTCCCTCCCNTTTTTTTTTTTCTT
rJMSF031K09+          TGGATNTCAATGACNGATGATGATACATACTCCCTAGTCCCTCCCNTTTTTTTTTTTCTT
JMFS071E09-           TGGATCTCAATGACAGATGATGATACATACTCCCTAGTCCCTCCCATTTTTTTTTTTCTT
                      ____________________________________________________________
consensus             TGGATCTCAATGACAGATGATGATACATACTCCCTAGTCCCTCCCATTTTTTTTTTTCTT
 
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rJMSF037F12+          CCAAGTAAATATCATAAATAGTTTCATTTTCTTGTATTACCATTCTAATTAAAGCTGGAA
rJMSF023A15+          CCAAGTAAATATCATAAATAGTTTCATTTTCTTGTATTACCATTCTAATTAAAGCTGGAA
rJMSF031K09+          CCAAGTAAATATCATAAATAGTTTCATTTTCTTGTATTACCATTCTAATTAAAGCTGGAA
JMFS071E09-           CCAAGTAAATATCATAAATAGTTTCATTTTCTTGTATTACCATTCTAATTAAAGCTGGAA
                      ____________________________________________________________
consensus             CCAAGTAAATATCATAAATAGTTTCATTTTCTTGTATTACCATTCTAATTAAAGCTGGAA
 
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rJMSF037F12+          AAGTTG                                                      
rJMSF023A15+          AAGTTGTGTACTTTCTATGGGCAATCAGAAGAGGAAAAATANGTAGTTTTCCT       
rJMSF031K09+          AAGTTGTGTACTTTCTATGGGCAATCAGAAGAGGAAAAATATGTAGTTTTCCTT      
JMFS071E09-           AAGTTGTGTACTTTCTATGGGCAATGAGAAGAGGAAAAATATGTAGTTTTCCTTXXXXXX
                      ____________________________________________________________
consensus             AAGTTGTGTACTTTCTATGGGCAATCAGAAGAGGAAAAATATGTAGTTTTCCTTNNNNNN
 
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JMFS071E09-           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGGGGGGGGGGGGACCCAAA
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGGGGGGGGGGGACCCAAA