Contig 000446:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017G07Sequence585000446 (2)ref|XP_009759811.1|2e-08PREDICTED: chromodomain-helicase-DNA-binding protein 4-like isoform X2 [Nicotia
JMFS071B07Sequence621000446 (2)ref|XP_009759811.1|3e-08PREDICTED: chromodomain-helicase-DNA-binding protein 4-like isoform X2 [Nicotia

Alignment

This contig is upended


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JMFS017G07+                                                                   CAAC
                      ____________________________________________________________
consensus                                                                     CAAC
 
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JMFS017G07+           TCAACGTCATCATCATCTACACCATAAACTTCATCTGGTTTGAAGTCCTCATCATTATCA
JMFS071B07+                                                  TTGAAGTCCTCATCATTATCA
                      ____________________________________________________________
consensus             TCAACGTCATCATCATCTACACCATAAACTTCATCTGGTTTGAAGTCCTCATCATTATCA
 
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JMFS017G07+           TCATCGTCATAATCTTCATCATCATCTTCCCTGTACGAAACTCTTTTCCTTTTTCTTGGT
JMFS071B07+           TCATCGTCATAATCTTCATCATCATCTTCCCTGTACGAAACTCTTTTCCTTTTTCTTGGT
                      ____________________________________________________________
consensus             TCATCGTCATAATCTTCATCATCATCTTCCCTGTACGAAACTCTTTTCCTTTTTCTTGGT
 
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JMFS017G07+           TTTACAGCTCTGTTTTTCTTTCTCTGTGGTTCTCTTTGTCTAGCAACCTTCTTAACCTTC
JMFS071B07+           TTTACAGCTCTGTTTTTCTTTCTCTGTGGTTCTCTTTGTCTAGCAACCTTCTTAACCTTC
                      ____________________________________________________________
consensus             TTTACAGCTCTGTTTTTCTTTCTCTGTGGTTCTCTTTGTCTAGCAACCTTCTTAACCTTC
 
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JMFS017G07+           TTCCTCTCCAGCTCTTCCTCATCATCCTCTTCCTCATATTCACATTCACCTAGAATCTCC
JMFS071B07+           TTCCTCTCCAGCTCTTCCTCATCATCCTCTTCCTCATATTCACATTCACCTAGAATCTCC
                      ____________________________________________________________
consensus             TTCCTCTCCAGCTCTTCCTCATCATCCTCTTCCTCATATTCACATTCACCTAGAATCTCC
 
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JMFS017G07+           TCAGATTCATCCCCAGCAAAGGAAGAGTATTCATCCTCTGACTCATCACATTCATTTTCA
JMFS071B07+           TCAGATTCATCCCCAGCAAAGGAAGAGTATTCATCCTCTGACTCATCACATTCATTTTCA
                      ____________________________________________________________
consensus             TCAGATTCATCCCCAGCAAAGGAAGAGTATTCATCCTCTGACTCATCACATTCATTTTCA
 
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JMFS017G07+           TCAACCATGTAATCTTCATCAGATTCATCAGAACCCTTGCACTCAGATCGGACCTTCCTC
JMFS071B07+           TCAACCATGTAATCTTCATCAGATTCATCAGAACCCTTGCACTCAGATCGGACCTTCCTC
                      ____________________________________________________________
consensus             TCAACCATGTAATCTTCATCAGATTCATCAGAACCCTTGCACTCAGATCGGACCTTCCTC
 
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JMFS017G07+           CTACCGTAAGGCTTGCGCCCAAAATTGCTTTCTCTTGCCATCTGCACATACACCCACTAA
JMFS071B07+           CTACCGTAAGGCTTGCGCCCAAAATTGCTTTCTCTTGCCATCTGCACATACACCCACTAA
                      ____________________________________________________________
consensus             CTACCGTAAGGCTTGCGCCCAAAATTGCTTTCTCTTGCCATCTGCACATACACCCACTAA
 
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JMFS017G07+           AGCAGAAACCAGGGCTCGACTGGGATCAAACCATAACATAACCCATTTATCTTGACTCAC
JMFS071B07+           AGCAGAAACCAGGGCTCGACTGGGATCAAACCATAACATAACCCATTTATCTTGACTCAC
                      ____________________________________________________________
consensus             AGCAGAAACCAGGGCTCGACTGGGATCAAACCATAACATAACCCATTTATCTTGACTCAC
 
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JMFS017G07+           TGAACGGCATAAAATCAATCAACCTGGACAACAAGAAGCATTTTTCTTCTCACAGATGTT
JMFS071B07+           TGAACGGCATAAAATCAATCAACCTGGACAACAAGAAGCATTTTTCTTCTCACAGATGTT
                      ____________________________________________________________
consensus             TGAACGGCATAAAATCAATCAACCTGGACAACAAGAAGCATTTTTCTTCTCACAGATGTT
 
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JMFS017G07+           CCCTGAGAAACAAAAACCCCCCAAGCAAGGA                             
JMFS071B07+           CCCTGAGAAACAAAAACCCCCCAAGCAAGGAGATTAACAGCTCAGCTATAGATATACATA
                      ____________________________________________________________
consensus             CCCTGAGAAACAAAAACCCCCCAAGCAAGGAGATTAACAGCTCAGCTATAGATATACATA
 
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JMFS071B07+           TACGTCTGCATATGCATCCATATGTGTATATGGTGATGCGGTGAAATCCGAAAGAGAAGG
                      ____________________________________________________________
consensus             TACGTCTGCATATGCATCCATATGTGTATATGGTGATGCGGTGAAATCCGAAAGAGAAGG