Contig 000441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039L10Sequence635015290741000441 (2)gb|ADN65134.1|9e-101RelA/SpoT and calcium-binding EF-hand domain containing protein [Ipomoea nil]
JMFS068A03Sequence615000441 (2)gb|ADN65134.1|9e-55RelA/SpoT and calcium-binding EF-hand domain containing protein [Ipomoea nil]

Alignment

This contig is upended


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rJMFF039L10+                                           CAGGACACGTGAAATTGTTCAATCATT
                      ____________________________________________________________
consensus                                              CAGGACACGTGAAATTGTTCAATCATT
 
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rJMFF039L10+          GTGGCAAGAAATACCTAGTAGGTCAAAAGACTATATTGCCAAGCCGAAGGCCAATGGCTA
                      ____________________________________________________________
consensus             GTGGCAAGAAATACCTAGTAGGTCAAAAGACTATATTGCCAAGCCGAAGGCCAATGGCTA
 
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rJMFF039L10+          CAAGAGCTTACACATGGCTGTTGATATAAGTGAAAAAAATGGCCATAATAGACCACTGAT
                      ____________________________________________________________
consensus             CAAGAGCTTACACATGGCTGTTGATATAAGTGAAAAAAATGGCCATAATAGACCACTGAT
 
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rJMFF039L10+          GGAAATTCAAATACGCACATCATATATGGACATGCTTGCAGCTGGTGGAACAGCATCTCA
JMFS068A03+                                                        TGGAACAGCATCTCA
                      ____________________________________________________________
consensus             GGAAATTCAAATACGCACATCATATATGGACATGCTTGCAGCTGGTGGAACAGCATCTCA
 
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rJMFF039L10+          TGCATTATACAAGGGTGGTCTTACTGATCCAGAAGAGGCAAGACGGTTGAAGGCAATTAT
JMFS068A03+           TGCATTATACAAGGGTGGTCTTACTGATCCAGAAGAGGCAAGACGGTTGAAGGCAATTAT
                      ____________________________________________________________
consensus             TGCATTATACAAGGGTGGTCTTACTGATCCAGAAGAGGCAAGACGGTTGAAGGCAATTAT
 
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rJMFF039L10+          GATGGCTGCAGCAGAACTTGCAGCTCTGCGTCTTAAAGATCTCCCCTCAACAAATCCTAA
JMFS068A03+           GATGGCTGCAGCAGAACTTGCAGCTCTGCGTCTTAAAGATCTCCCCTCAACAAATCCTAA
                      ____________________________________________________________
consensus             GATGGCTGCAGCAGAACTTGCAGCTCTGCGTCTTAAAGATCTCCCCTCAACAAATCCTAA
 
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rJMFF039L10+          AGATCTTGACGTTGACAATAGAGACATGGCGTTTCACCTTCTTGACAAAAATGGAGATGG
JMFS068A03+           AGATCTTGACGTTGACAATAGAGACATGGCGTTTCACCTTCTTGACAAAAATGGAGATGG
                      ____________________________________________________________
consensus             AGATCTTGACGTTGACAATAGAGACATGGCGTTTCACCTTCTTGACAAAAATGGAGATGG
 
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rJMFF039L10+          AAAAATCAGCATTGAAGAACTTATGGAAGTGATGGAAGAGCTTGGTGCTCAAGGCGAAGA
JMFS068A03+           AAAAATCAGCATTGAAGAACTTATGGAAGTGATGGAAGAGCTTGGTGCTCAAGGCGAAGA
                      ____________________________________________________________
consensus             AAAAATCAGCATTGAAGAACTTATGGAAGTGATGGAAGAGCTTGGTGCTCAAGGCGAAGA
 
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rJMFF039L10+          TGCTCGAGAGATGATGCAGCTCCTTGATTCAAATAATGATAGTTTACTGAGTTCAGATGA
JMFS068A03+           TGCTCGAGAGATGATGCAGCTCCTTGATTCAAATAATGATGGTTTACTGAGTTCAGATGA
                      ____________________________________________________________
consensus             TGCTCGAGAGATGATGCAGCTCCTTGATTCAAATAATGATGGTTTACTGAGTTCAGATGA
 
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rJMFF039L10+          ATTCGATTTATTCCAAAAGCAGATTGAATTCATGCGGGATTTGGAATATAGAGACAATCA
JMFS068A03+           ATTCGATTTATTCCAAAAGCAGATTGAATTCATGCGGGATTTGGAATATAGAGACAATCA
                      ____________________________________________________________
consensus             ATTCGATTTATTCCAAAAGCAGATTGAATTCATGCGGGATTTGGAATATAGAGACAATCA
 
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rJMFF039L10+          CTACAAAACCCTGTTAAATGAGAAGCTTCAAATCACAAATATCAATGTTTGAATTTAGGA
JMFS068A03+           CTACAAAACCCTGTTAAATGAGAAGCTTCAAATCACAAATATCAATGTTTGAATTTAGGA
                      ____________________________________________________________
consensus             CTACAAAACCCTGTTAAATGAGAAGCTTCAAATCACAAATATCAATGTTTGAATTTAGGA
 
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rJMFF039L10+          AATCAGTAAAATTGATGGTCATCAAATTTGGACTTGAGTTGACTGAAACCACAAAAGATT
JMFS068A03+           AATCAGTAAAATTGATGGTCATCAAATTTGGACTTGAGTTGACTGAAACCACAAAAGATT
                      ____________________________________________________________
consensus             AATCAGTAAAATTGATGGTCATCAAATTTGGACTTGAGTTGACTGAAACCACAAAAGATT
 
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rJMFF039L10+          TTAAACTTATAATAATGTATATATAGATTCCTTTGTCTACATTTCTACAAGATC      
JMFS068A03+           TTAAACTTATAATAATGTATATATAGATTCCTTTGTCTACATTTCTACAAGATCTACATA
                      ____________________________________________________________
consensus             TTAAACTTATAATAATGTATATATAGATTCCTTTGTCTACATTTCTACAAGATCTACATA
 
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JMFS068A03+           CGTAATTCCATTTTAAAGCTTCCGTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus             CGTAATTCCATTTTAAAGCTTCCGTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC