Contig 000440:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS067G12Sequence617000440 (3)emb|CDO98718.1|1e-69unnamed protein product [Coffea canephora]
JMFS075C05Sequence620000440 (3)emb|CDO98718.1|1e-69unnamed protein product [Coffea canephora]
JMFS168D05Sequence623000440 (3)emb|CBI25980.3|6e-65unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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JMFS067G12+                                                      CATTGGAGACAATGAAG
                      ____________________________________________________________
consensus                                                        CATTGGAGACAATGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067G12+           AAAAATTATGCTTAAGACCATGGCTTTCAGCTAAATTAGTAGTAGAAAAGGAACTATCAA
                      ____________________________________________________________
consensus             AAAAATTATGCTTAAGACCATGGCTTTCAGCTAAATTAGTAGTAGAAAAGGAACTATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS168D05+                         CTGTTTGCCACAATATCGGATTCACTTTGCACTACCATTGGGAAAT
JMFS075C05+                         CTGTTTGCCACAATATCGGATTCACTTTGCACTACCATTGGGAAAT
JMFS067G12+           GGAATGGGGTTTTACTGTTTGCCACAATATCGGATTCACTTTGCACTACCATTGGGAAAT
                      ____________________________________________________________
consensus             GGAATGGGGTTTTACTGTTTGCCACAATATCGGATTCACTTTGCACTACCATTGGGAAAT
 
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JMFS168D05+           ATGATTGTGTAGACTCGGGGTTTTCATAAGAGGGGATGGTGTAGTACTGCTGAGTCCCCA
JMFS075C05+           ATGATTGTGTAGACTCGGGGTTTTCATAAGAGGGGATGGTGTAGTACTGCTGAGTCCCCA
JMFS067G12+           ATGATTGTGTAGACTCGGGGTTTTCATAAGAGGGGATGGTGTAGTACTGCTGAGTCCCCA
                      ____________________________________________________________
consensus             ATGATTGTGTAGACTCGGGGTTTTCATAAGAGGGGATGGTGTAGTACTGCTGAGTCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS168D05+           TATATGAACTGTCAACTCCTACCACAGCACCAGGAGTATACGGGTTATATGGAGACTGTG
JMFS075C05+           TATATGAACTGTCAACTCCTACCACAGCACCAGGAGTATACGGGTTATATGGAGACTGTG
JMFS067G12+           TATATGAACTGTCAACTCCTACCACAGCACCAGGAGTATACGGGTTATATGGAGACTGTG
                      ____________________________________________________________
consensus             TATATGAACTGTCAACTCCTACCACAGCACCAGGAGTATACGGGTTATATGGAGACTGTG
 
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JMFS168D05+           CATACCCATAGCTAGGTGTATAATATACATAAGGAAAGCTTTCACTTTGTGCACCCGCAT
JMFS075C05+           CATACCCATAGCTAGGTGTATAATATACATAAGGAAAGCTTTCACTTTGTGCACCCGCAT
JMFS067G12+           CATACCCATAGCTAGGTGTATAATATACATAAGGAAAGCTTTCACTTTGTGCACCCGCAT
                      ____________________________________________________________
consensus             CATACCCATAGCTAGGTGTATAATATACATAAGGAAAGCTTTCACTTTGTGCACCCGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS168D05+           AAATTTCTTGACCATCCAGACCAAAAACTCTTTGGTGGTCATCCCAATTGCCGGGCGAAT
JMFS075C05+           AAATTTCTTGACCATCCAGACCAAAAACTCTTTGGTGGTCATCCCAATTGCCGGGCGAAT
JMFS067G12+           AAATTTCTTGACCATCCAGACCAAAAACTCTTTGGTGGTCATCCCAATTGCCGGGCGAAT
                      ____________________________________________________________
consensus             AAATTTCTTGACCATCCAGACCAAAAACTCTTTGGTGGTCATCCCAATTGCCGGGCGAAT
 
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JMFS168D05+           CAAATCCTGTACAATAATACCCATAATTGGTGGCAGTAGGATAATACAAACCCTGATCAA
JMFS075C05+           CAAATCCTGTACAATAATACCCATAATTGGTGGCAGTAGGATAATACAAACCCTGATCAA
JMFS067G12+           CAAATCCTGTACAATAATACCCATAATTGGTGGCAGTAGGATAATACAAACCCTGATCAA
                      ____________________________________________________________
consensus             CAAATCCTGTACAATAATACCCATAATTGGTGGCAGTAGGATAATACAAACCCTGATCAA
 
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JMFS168D05+           TAACAAACTCAGGAACACCTTCACTATACATAGCTTCAAACCTTTCAAGAATCAGACTGG
JMFS075C05+           TAACAAACTCAGGAACACCTTCACTATACATAGCTTCAAACCTTTCAAGAATCAGACTGG
JMFS067G12+           TAACAAACTCAGGAACACCTTCACTATACATAGCTTCAAACCTTTCAAGAATCAGACTGG
                      ____________________________________________________________
consensus             TAACAAACTCAGGAACACCTTCACTATACATAGCTTCAAACCTTTCAAGAATCAGACTGG
 
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JMFS168D05+           TAAAGTGGAGGTTTGTCTCAGTACTTCAATC                             
JMFS075C05+           TAAAGTGGAGGTTTGTCTCAGTACTTCAATC                             
JMFS067G12+           TAAAGTGGAGGTTTGTCTCAGTACTTCAATCTCAAGCTATTAAACGGGAGAATTCCTCGT
                      ____________________________________________________________
consensus             TAAAGTGGAGGTTTGTCTCAGTACTTCAATCTCAAGCTATTAAACGGGAGAATTCCTCGT
 
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JMFS067G12+           CTTTTCTTTTGATCTCTCGGAAATTTTTCAAAGATGAAGCTCTTGAGGAGGAAAAGAAAA
                      ____________________________________________________________
consensus             CTTTTCTTTTGATCTCTCGGAAATTTTTCAAAGATGAAGCTCTTGAGGAGGAAAAGAAAA