| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS058H10 | Sequence | 638 | 000431 (3) | emb|CDP05802.1| | 1e-30 | unnamed protein product [Coffea canephora] | |||||
| JMSF008E16 | Sequence | 310 | 000502 (5) | ref|XP_006452164.1| | 2e-30 | hypothetical protein CICLE_v100072722mg, partial [Citrus clementina] gb|ESR65404 | 765 | 000431 (3) | ref|XP_009591127.1| | 199 | PREDICTED: uncharacterized protein LOC104088190 [Nicotiana tomentosiformis] |
| JMSF030P18 | Sequence | 581 | 000502 (5) | ref|XP_009611150.1| | 236 | PREDICTED: uncharacterized protein LOC104104710 [Nicotiana tomentosiformis] | 764 | 000431 (3) | ref|XP_009591127.1| | 205 | PREDICTED: uncharacterized protein LOC104088190 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF030P18+ CTTTTGAGACATATGCTGGTGTAACCCTGGAGTTGACAT
rJMSF008E16+ ACAT
____________________________________________________________
consensus CTTTTGAGACATATGCTGGTGTAACCCTGGAGTTGACAT
. : . : . : . : . : . :
rJMSF030P18+ AGTTAGCTCAGAAGAGGAGATTGATGATGGAATGGCAAAGTGGGCGGTGGAGAACCTGAA
rJMSF008E16+ AGTTAGCTCAGAAGAGGAGATTGATGATGGAATGGCAAAGTGGGCGGTGGAGAACTTGAA
____________________________________________________________
consensus AGTTAGCTCAGAAGAGGAGATTGATGATGGAATGGCAAAGTGGGCGGTGGAGAACTTGAA
. : . : . : . : . : . :
rJMSF030P18+ ATTCTCAGTGAAACAGCCGATTGAAGCAGTTGTGACAAAGGATGAACTGCAATATCTAGC
rJMSF008E16+ ATTCTCAGTGAAACAGCCGATTGAAGCAGTTGTGACAAAGGATGAACTGCAATATCTAGC
____________________________________________________________
consensus ATTCTCAGTGAAACAGCCGATTGAAGCAGTTGTGACAAAGGATGAACTGCAATATCTAGC
. : . : . : . : . : . :
rJMSF030P18+ TTTCTTGTGCCACTCTGAAATTGATTCTATGGGCAGGCTAACTGTTGGTATCCTACGGGT
rJMSF008E16+ TTTCTTGTGCCACTCTGAAATTGATTCTATGGGCAGGCTAACTGTTGGTACCCTACGGGT
JMFS058H10- GATTCTATGGGCAGGCTAACTGTTGGTATCCTACGGGT
____________________________________________________________
consensus TTTCTTGTGCCACTCTGAAATTGATTCTATGGGCAGGCTAACTGTTGGTATCCTACGGGT
. : . : . : . : . : . :
rJMSF030P18+ ACTTAATTTAGAAGGTTCAATTGGCGAAGCAGCAATTAGTCAACTAAGTAATTTGGGTAG
rJMSF008E16+ ACTTAATTTAGAAGGTTCAATTGGCGAAGCAGCAATTAGTCAACTAAGTAATTTGGGTAG
JMFS058H10- ACTTAATTTAGAAGGTTCAATTGGCGAAGCAGCAATTAGTCAACTAAGTAATTTGGGTAG
____________________________________________________________
consensus ACTTAATTTAGAAGGTTCAATTGGCGAAGCAGCAATTAGTCAACTAAGTAATTTGGGTAG
. : . : . : . : . : . :
rJMSF030P18+ TGACAGATTTGAGAGAATATTCACCCCTGAAAAGCTCACCAAGAGCAGTAGTAGTGTTAG
rJMSF008E16+ TGACAGATTTGAGAGAATATTCACCCCTGAAAAGCTCACCAAGAGCAGTAGTAGTGTTAG
JMFS058H10- TGACAGATTTGAGAGAATATTCACCCTTGAAAAGCTCACCAAGAGCAGTAGTAGTGTTAG
____________________________________________________________
consensus TGACAGATTTGAGAGAATATTCACCCCTGAAAAGCTCACCAAGAGCAGTAGTAGTGTTAG
. : . : . : . : . : . :
rJMSF030P18+ TTGTACTGGACACAGTCCATCCTCAAACAGAAGATGTGGGAACCGAAATTCTAGTTTGGA
rJMSF008E16+ TTGTACTGGACACAGTCCATCCTCAAACAGAAGATGTGGGAACCGAAATTCTAGTTTGGA
JMFS058H10- TTGTACTGGACACAGTCCATCCTCAAACAGAAGATGTGGGAACCGAAATTCTAGTTTGGA
____________________________________________________________
consensus TTGTACTGGACACAGTCCATCCTCAAACAGAAGATGTGGGAACCGAAATTCTAGTTTGGA
. : . : . : . : . : . :
rJMSF030P18+ TGCAACCGTAGTTTCTCTTGAAGAGTCATTATTGGAAACACAGGTTAGGTGTGCAGCCCT
rJMSF008E16+ TGCAACCGTAGTTTCTCTTGAAGAGTCATTATTGGAAACACAGGTTAGGTGTGCAGCCCT
JMFS058H10- TGCAACCGTAGTTTCTCTTGAAGAGTCATTATTGGAAACACAGGTTAGGTGTGCAGCCCT
____________________________________________________________
consensus TGCAACCGTAGTTTCTCTTGAAGAGTCATTATTGGAAACACAGGTTAGGTGTGCAGCCCT
. : . : . : . : . : . :
rJMSF030P18+ CGGGGAGGGGCTACATAGTTTAGAAACTTCAGCAGAGCAGCTCGAGAATTTTAAACAACT
rJMSF008E16+ CGGGGAGGGGCTACATAGTTTAGAAACTTCAGCAGAGCAGCTCGAGAATTTTAAACAACT
JMFS058H10- CGGGGAGGGGCTACATAGTTTAGAAACTTCAGCAGAGCAGCTCGAGAATTTTAAACAACT
____________________________________________________________
consensus CGGGGAGGGGCTACATAGTTTAGAAACTTCAGCAGAGCAGCTCGAGAATTTTAAACAACT
. : . : . : . : . : . :
rJMSF030P18+ GGGTCAGAAACTAGAGAACATGCAGAAATTGTTGCTGCAACTGAGGACTCAAATCTAATA
rJMSF008E16+ GGGTCAGAAACTAGAGAACATGCAGAAATTGTTGCTGCAACTGAGGACTCAAATCTAATA
JMFS058H10- GGGTCAGAAACTAGAGAACATGCAGAAATTGTTGCTGCAACTGAGGACTCAAATCTAATA
____________________________________________________________
consensus GGGTCAGAAACTAGAGAACATGCAGAAATTGTTGCTGCAACTGAGGACTCAAATCTAATA
. : . : . : . : . : . :
rJMSF030P18+ CTTTTGATAAGTTATAAGTATGTACAATTTTGGGATACAACAAATCTCCTTATCATATAG
rJMSF008E16+ CTTTTGATAAGTTATAAGTATGTACAATTTTGGGATACAACAAATCTCCTTATCATATAG
JMFS058H10- CTTTTGATAAGTTATAAGTATGTACAATTTTGGGATACAACAAATCTCCTTATCATATAG
____________________________________________________________
consensus CTTTTGATAAGTTATAAGTATGTACAATTTTGGGATACAACAAATCTCCTTATCATATAG
. : . : . : . : . : . :
rJMSF030P18+ AGCAAGTCAAGCATTTTTTATTCAATACAAATGTATAGATGAATCGAACTTATATGTTGT
rJMSF008E16+ AGCAAGTCAAGCATTTTTTATTCAATACAAATGTATAGATGAATCGAACTTATATGTTGT
JMFS058H10- AGCAAGTCAAGCATTTTTTATTCAATACAAATGTATAGATGAATCGAACTTATATGTTGT
____________________________________________________________
consensus AGCAAGTCAAGCATTTTTTATTCAATACAAATGTATAGATGAATCGAACTTATATGTTGT
. : . : . : . : . : . :
rJMSF030P18+ GTATGCTTTGAAAAGCAATTTCATAGTTCTGCGAAAAAAGTTTTGTATTGCTGAAGTTGC
rJMSF008E16+ GTATGCTTTGAAAAGCAATTTCATAGTTCTGCGAAAAAAGTTTTGTATTGCTGAAGTTGC
JMFS058H10- GTATGCTTTGAAAAGCAATTTCATAGTTCTGCGAAAAAAGTTTTGTATTGCTGAAGTTGC
____________________________________________________________
consensus GTATGCTTTGAAAAGCAATTTCATAGTTCTGCGAAAAAAGTTTTGTATTGCTGAAGTTGC
. : . : . : . : . : . :
rJMSF030P18+ AGTAC
rJMSF008E16+ AGTACTTGTTGAGAATCAGTTCTGT
JMFS058H10- AGTACTTGTTGAGAATCAGTTCTGTTGAAAATTCATGCTGTTTTGCCACACCATGTTGTA
____________________________________________________________
consensus AGTACTTGTTGAGAATCAGTTCTGTTGAAAATTCATGCTGTTTTGCCACACCATGTTGTA