| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS006A09 | Sequence | 560 | 000427 (10) | ref|XP_009789996.1| | 2e-66 | PREDICTED: pumilio homolog 5 [Nicotiana sylvestris] ref|XP_009789997.1| PREDICTE | |||||
| JMFS039E01 | Sequence | 475 | 000427 (10) | ref|XP_006342853.1| | 4e-16 | PREDICTED: pumilio homolog 5-like [Solanum tuberosum] | |||||
| JMFS039F01 | Sequence | 655 | 000427 (10) | ref|XP_006342853.1| | 1e-38 | PREDICTED: pumilio homolog 5-like [Solanum tuberosum] | |||||
| JMFS043D01 | Sequence | 602 | 000427 (10) | ref|XP_009789996.1| | 1e-34 | PREDICTED: pumilio homolog 5 [Nicotiana sylvestris] ref|XP_009789997.1| PREDICTE | |||||
| JMFS047G12 | Sequence | 615 | 000427 (10) | ref|XP_009789996.1| | 1e-37 | PREDICTED: pumilio homolog 5 [Nicotiana sylvestris] ref|XP_009789997.1| PREDICTE | |||||
| JMFS055C01 | Sequence | 609 | 000427 (10) | ref|XP_006342853.1| | 3e-36 | PREDICTED: pumilio homolog 5-like [Solanum tuberosum] | |||||
| JMFS127D06 | Sequence | 620 | 000427 (10) | ref|XP_006342853.1| | 4e-41 | PREDICTED: pumilio homolog 5-like [Solanum tuberosum] | |||||
| JMFS139F08 | Sequence | 613 | 000427 (10) | ref|XP_009789996.1| | 1e-57 | PREDICTED: pumilio homolog 5 [Nicotiana sylvestris] ref|XP_009789997.1| PREDICTE | |||||
| JMFS140F10 | Sequence | 626 | 000427 (10) | ref|XP_006342853.1| | 1e-45 | PREDICTED: pumilio homolog 5-like [Solanum tuberosum] | |||||
| JMFS152G09 | Sequence | 625 | 000427 (10) | ref|XP_006342853.1| | 7e-46 | PREDICTED: pumilio homolog 5-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
JMFS043D01+ CCACCATGCAGGTTTTCTTGGAAACATCTGACCCAGTGCCACCGCCTCCAAG
JMFS047G12+ TTCTTGGAAACATCTGACCCAGTGCCACCGCCTCCAAG
____________________________________________________________
consensus CCACCATGCAGGTTTTCTTGGAAACATCTGACCCAGTGCCACCGCCTCCAAG
. : . : . : . : . : . :
JMFS043D01+ TTCACTTCTCGAGCGTCGATCGCCGCCTGTTTCTTTGTTGTTTTCTCTAGAACATGGGTT
JMFS047G12+ TTCACTTCTCGAGCGTCGATCGCCGCCTGTTTCTTTGTTGTTTTCTCTAGAACATGGGTT
JMFS139F08+ TCTAGAACATGGGTT
____________________________________________________________
consensus TTCACTTCTCGAGCGTCGATCGCCGCCTGTTTCTTTGTTGTTTTCTCTAGAACATGGGTT
. : . : . : . : . : . :
JMFS043D01+ CCCTAACGTTTCGAGATATGATGTCTCTCCAAAAGAGAGAATTGAAGAATTGTTAGCTCC
JMFS047G12+ CCCTAACGTTTCGAGATATGATGTCTCTCCAAAAGAGAGAATTGAAGAATTGTTAGCTCC
JMFS139F08+ CCCTAACGTTTCGAGATATGATGTCTCTCCAAAAGAGAGAATTGAAGAATTGTTAGCTCC
____________________________________________________________
consensus CCCTAACGTTTCGAGATATGATGTCTCTCCAAAAGAGAGAATTGAAGAATTGTTAGCTCC
. : . : . : . : . : . :
JMFS043D01+ AGCTGCACTATGCCCGGTTAAAGCTTCGTTGCAAGAATCTGAACCCGTGTCAGGCAACTT
JMFS047G12+ AGCTGCACTATGCCCGGTTAAAGCTTCGTTGCAAGAATCTGAACCCGTGTCAGGCAACTT
JMFS139F08+ AGCTGCACTATGCCCGGTTAAAGCTTCGTTGCAAGAATCTGAACCCGTGTCAGGCAACTT
____________________________________________________________
consensus AGCTGCACTATGCCCGGTTAAAGCTTCGTTGCAAGAATCTGAACCCGTGTCAGGCAACTT
. : . : . : . : . : . :
JMFS043D01+ CGGAATATCAAGAGAAAGATTTTCCAGGCCAAGTGCTTGAATATCACGTTTAGTTGGTTC
JMFS047G12+ CGGAATATCAAGAGAAAGATTTTCCAGGCCAAGTGCTTGAATATCACGTTTAGTTGGTTC
JMFS139F08+ CGGAATATCAAGAGAAAGATTTTCCAGGCCAAGTGCTTGAATATCACGTTTAGTTGGTTC
JMFS006A09+ CTTGAATATCACGTTAGTTTGGTTC
____________________________________________________________
consensus CGGAATATCAAGAGAAAGATTTTCCAGGCCAAGTGCTTGAATATCACGTTTAGTTGGTTC
. : . : . : . : . : . :
JMFS043D01+ CTCCACAGCAATGTGGCCCGATAAACGAGACTGACTATAAAGTGGCGGAGTGCGTGCGAA
JMFS047G12+ CTCCACAGCAATGTGGCCCGATAAACGAGACTGACTATAAAGTGGCGGAGTGCGTGCGAA
JMFS139F08+ CTCCACAGCAATGTGGCCCGATAAACGAGACTGACTATAAAGTGGCGGAGTGCGTGCGAA
JMFS006A09+ CTCCACAGCAATGTGGCCCGATAAACGAGACTGACTATAAAGTGGCGGAGTGCGTGCGAA
____________________________________________________________
consensus CTCCACAGCAATGTGGCCCGATAAACGAGACTGACTATAAAGTGGCGGAGTGCGTGCGAA
. : . : . : . : . : . :
JMFS043D01+ ATCATCCTGAATTAAATCAACCAAACTTTTACGCCGACCAATCAAAGTACCTATGTTCTG
JMFS047G12+ ATCATCCTGAATTAAATCAACCAAACTTTTACGCCGACCAATCAAAGTACCTATGTTCTG
JMFS139F08+ ATCATCCTGAATTAAATCAACCAAACTTTTACGCCGACCAATCAAAGTACCTATGTTCTG
JMFS006A09+ ATCATCCTGAATTAAATCAACCAAACTTTTACGCCGACCAATCAAAGTACCTATGTTCTG
____________________________________________________________
consensus ATCATCCTGAATTAAATCAACCAAACTTTTACGCCGACCAATCAAAGTACCTATGTTCTG
. : . : . : . : . : . :
JMFS043D01+ TCCAGTCAATTCTGCGGCTCTACTCTCTGCCAAGTTATCTAAAGCATTCGGTGTTGAATT
JMFS047G12+ TCCAGTCAATTCTGCGGCTCTACTCTCTGCCAAGTTATCTAAAGCATTCGGTGTTGAATT
JMFS139F08+ TCCAGTCAATTCTGCGGCTCTACTCTCTGCCAAGTTATCTAAAGCATTCGGTGTTGAATT
JMFS006A09+ TCCAGTCAATTCTGCGGCTCTACTCTCTGCCAAGTTATCTAAAGCATTCGGTGTTGAATT
____________________________________________________________
consensus TCCAGTCAATTCTGCGGCTCTACTCTCTGCCAAGTTATCTAAAGCATTCGGTGTTGAATT
. : . : . : . : . : . :
JMFS043D01+ TTCATCCTCGGGCTCTTCGATATGAGTTGAAAGAGAGCCTCTAGGAAAGTGCACCAGCCT
JMFS047G12+ TTCATCCTCGGGCTCTTCGATATGAGTTGAAAGAGAGCCTCTAGGAAAGTGCACCAGCCT
JMFS139F08+ TTCATCCTCGGGCTCTTCGATATGAGTTGAAAGAGAGCCTCTAGGAAAGTGCACCAGCCT
JMFS006A09+ TTCATCCTCGGGCTCTTCGATATGAGTTGAAAGAGAGCCTCTAGGAAAGTGCACCAGCCT
____________________________________________________________
consensus TTCATCCTCGGGCTCTTCGATATGAGTTGAAAGAGAGCCTCTAGGAAAGTGCACCAGCCT
. : . : . : . : . : . :
JMFS043D01+ ATCGCCACTGTCACCAGAAGATGTGAATTTGTAGCTATCTTTCGTAGCCCCTACGTGGTG
JMFS047G12+ ATCGCCACTGTCACCAGAAGATGTGAATTTGTAGCTATCTTTCGTAGCCCCTACGTGGTG
JMFS139F08+ ATCGCCACTGTCACCAGAAGATGTGAATTTGTAGCTATCTTTCGTAGCCCCTACGTGGTG
JMFS006A09+ ATCGCCACTGTCACCAGAAGATGTGAATTTGTAGCTATCTTTCGTAGCCCCTACGTGGTG
____________________________________________________________
consensus ATCGCCACTGTCACCAGAAGATGTGAATTTGTAGCTATCTTTCGTAGCCCCTACGTGGTG
. : . : . : . : . : . :
JMFS043D01+ TGCAAGATGC
JMFS047G12+ TGCAAGATGCCTATTCTCCCTTGA
JMFS139F08+ TGCAAGATGCCTATTCTCCCTTGAGATTATAGGTGGAGGAAGCCTAGGGTTCAAGTTGAC
JMFS006A09+ TGCAAGATGCCTATTCTCCCTTGAGATTATAGGTGGAGGAAGCCTAGGGTTCAAGTTGAC
JMFS039F01+ AGGGTTCAAGTTGAC
____________________________________________________________
consensus TGCAAGATGCCTATTCTCCCTTGAGATTATAGGTGGAGGAAGCCTAGGGTTCAAGTTGAC
. : . : . : . : . : . :
JMFS139F08+ ATTCGAAGAATAGTATGCAAAATACGATGGATCGGACCGTATTTGTTCCTCAGACTGA
JMFS006A09+ ATTCGAAGAATAGTATGCAAAATACGATGGATCGGACCGTATTTGTTCCTCAGACTGACA
JMFS152G09+ AATAGTATGCAAAATACGATGGATCGGACCGTATTTGTTCCTCAGACTGACA
JMFS140F10+ CGAAGAATAGTATGCAAAATACGATGGATCGGACCGTATNTGTTCCTCAGACTGACA
JMFS039F01+ ATTCGAAGAATAGTATGCAAANTACGATGGATCGGACCGTA-TTGTTCCTCAGACTGACA
JMFS127D06+ GATGGATCGGACCGTATTTGTTCCTCAGACTGACA
JMFS055C01+ TCAGACTGACA
____________________________________________________________
consensus ATTCGAAGAATAGTATGCAAAATACGATGGATCGGACCGTATTTGTTCCTCAGACTGACA
. : . : . : . : . : . :
JMFS006A09+ GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAAATCCCAACCTCCTGATTGCTGATA
JMFS152G09+ GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAAATCCCAACCTCCTGATTGCTGATA
JMFS140F10+ GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAAATCCCAACCTCCTGATTGCTGATA
JMFS039F01+ GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAGATCCCAACCTCCTGATTGCTGATA
JMFS127D06+ GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAAATCCCAACCTCCTGATTGCTGATA
JMFS055C01+ GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAAATCCCAACCTCCTGATTGCTGATA
____________________________________________________________
consensus GTTCAGAAGAGCAGTGTCTAAATTCATCGAACCTAAATCCCAACCTCCTGATTGCTGATA
. : . : . : . : . : . :
JMFS006A09+ TATCAGGTTCCCGAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCA
JMFS152G09+ TATCAGGTTCCCGAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCACTACG
JMFS140F10+ TATCAGGTTCCCAAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCACTACG
JMFS039F01+ TATCAGGTTCCCGAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCACTACG
JMFS127D06+ TATCAGGTTCCCGAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCACTACG
JMFS039E01+ TGGAGGCGCACTGCCAATACG
JMFS055C01+ TATCAGGTTCCCGAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCACTACG
____________________________________________________________
consensus TATCAGGTTCCCGAATGCTGCAAATGAGCCTTCCATACTTGGAGGCGCACTGCCACTACG
. : . : . : . : . : . :
JMFS152G09+ ATTAGGAGCCTTGTTTCTGTTATCACCCTGAACTTTATGCCCTTTTAGGAGCAACCCCAA
JMFS140F10+ ATTAGGAGCCTTGTTTCTGTTATCACCCTGAACTTTATGCCCTTTTAGGAGCAACCCCAA
JMFS039F01+ ATTAGGAGCCTTGTTTCTGTTATCACCCTGAACTTTATGCCCTTTTAGGAGCAACCCCAA
JMFS127D06+ ATTAGGAGCCTTGTTTCTGTTATCACCCTGAACTTTATGCCCTTTTAGGAGCAACCCCAA
JMFS039E01+ ATTAGGAGCCTTGTTTATGTTATCACCCTGAACGTAATGCCCTTTTAGGAGCAACCCCAA
JMFS055C01+ ATTAGGAGCCTTGTTTCTGTTATCACCCTGAACTTTATGCCCTTTTAGGAGCAACCCCAA
____________________________________________________________
consensus ATTAGGAGCCTTGTTTCTGTTATCACCCTGAACTTTATGCCCTTTTAGGAGCAACCCCAA
. : . : . : . : . : . :
JMFS152G09+ CTCATCTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
JMFS140F10+ CTCATCTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
JMFS039F01+ CTCATCTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
JMFS127D06+ CTCATCTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
JMFS039E01+ CTCATGTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
JMFS055C01+ CTCATCTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
____________________________________________________________
consensus CTCATCTACAGCCATTTCATTCATAGGCTGTGCATATGCCACATCATCCTTAGAAGAACC
. : . : . : . : . : . :
JMFS152G09+ CCACTGCTCACGTCTCCTACTTTCCACTATTCTC-ATGGGGTTTTCAGTTGCCATGCTGC
JMFS140F10+ CCACTGCTCACGTCTCCTACTTTCCACTATTCTC-ATGGGGTTTTCAGTTGCCATGCTGC
JMFS039F01+ CCACTGCTCACGTCTCCTACTTTCCACTATTCTC-ATGGGGTTTTCAGTTGCCATGCTGC
JMFS127D06+ CCACTGCTCACGTCTCCTACTTTCCACTATTCTC-ATGGGGTTTTCAGTTGCCATGCTGC
JMFS039E01+ CCACTGCTCACGTCTCGTACTTTCCACTATTCTCAATGGGGTTTTCAGTTGCCATGCTGC
JMFS055C01+ CCACTGCTCACGTCTCCTACTTTCCACTATTCTC-ATGGGGTTTTCAGTTGCCATGCTGC
____________________________________________________________
consensus CCACTGCTCACGTCTCCTACTTTCCACTATTCTC-ATGGGGTTTTCAGTTGCCATGCTGC
. : . : . : . : . : . :
JMFS152G09+ TCAACGAATACAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
JMFS140F10+ TCAACGAATACAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
JMFS039F01+ TCAACGAATACAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
JMFS127D06+ TCAACGAATACAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
JMFS039E01+ TCAACGAATGCAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
JMFS055C01+ TCAACGAATACAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
____________________________________________________________
consensus TCAACGAATACAAAAAAACTTCCCTTCAGCAAATATCAAATTTCTAGCCAAGGCCCTTCA
. : . : . : . : . : . :
JMFS152G09+ TCAACATCAG-GTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
JMFS140F10+ TCAACATCAG-GTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
JMFS039F01+ TCAACATCAG-GTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
JMFS127D06+ TCAACATCAG-GTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
JMFS039E01+ TCAACATCAGAGTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
JMFS055C01+ TCAACATCAG-GTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
____________________________________________________________
consensus TCAACATCAG-GTCGCCAGTGAGTCTCAGAAGCTGACGTCCCCCGACCAAAGTCTGAAGC
. : . : . : . : . : . :
JMFS152G09+ TTGACGCCGCCTGCGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
JMFS140F10+ TTGACGCCGCCTGCGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
JMFS039F01+ TTGACGCCGCCTGCGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
JMFS127D06+ TTGACGCCGCCTGCGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
JMFS039E01+ TTGACGCCGCCTACGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
JMFS055C01+ TTGACGCCGCCTGCGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
____________________________________________________________
consensus TTGACGCCGCCTGCGACGATGGCCGATGATAATCAAGCCGTACGATCAATTCAATCCGTC
. : . : . : . : . : . :
JMFS152G09+ AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTTCT
JMFS140F10+ AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTTCT
JMFS039F01+ AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTTCT
JMFS127D06+ AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTTCT
JMFS039E01+ AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTT
JMFS055C01+ AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTTCT
____________________________________________________________
consensus AACAGATTTCCAGAGCCCAGCATAGAGAAGAATATGAAAGAGAAAGGGACAGAGCTTTCT
. : . : . : . : . : . :
JMFS152G09+ TGTTTCTTTAAGAGAAGTAGACGACTAGAGAGAGA
JMFS140F10+ TGTTTCTTTAAGAGAAGTAGACGACTAGAGA
JMFS039F01+ TGTTTCTTTAAGAGAAGTAGACGACTAGAGAGAGAGAGTATAG
JMFS127D06+ TGTTTCTTTAAGAGAAGTAGACGACTAGAGAGAGAGAGTATAG
JMFS055C01+ TGTTTCTTTAAGAGAAGTAGACGACTAGAGAGAGAGAGTATAGAGATACAGCATACAGAT
____________________________________________________________
consensus TGTTTCTTTAAGAGAAGTAGACGACTAGAGAGAGAGAGTATAGAGATACAGCATACAGAT