Contig 000424:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS050B06Sequence600000424 (3)ref|XP_009592748.1|305PREDICTED: WD repeat-containing protein 61-like [Nicotiana tomentosiformis]
JMFS053A01Sequence497000424 (3)ref|NP_001275289.1|3e-79vernalization independence 3-like protein [Solanum tuberosum] gb|ABC01893.1| ver
JMFS053A04Sequence579000424 (3)ref|NP_001275289.1|3e-98vernalization independence 3-like protein [Solanum tuberosum] gb|ABC01893.1| ver

Alignment

This contig is upended


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JMFS053A01+                                                          CCTTGCATCATGA
JMFS053A04+                                                  AAAAGCACCCTTGCATCATGA
                      ____________________________________________________________
consensus                                                    AAAAGCACCCTTGCATCATGA
 
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JMFS053A01+           AGAGAAGGTGAAAACACGAGAGAACGCACAGGCATGCAATGACCTTCCAAGAAGTGTAAA
JMFS053A04+           AGAGAAGGTGAAAACACGAGAGAACGCACAGGCATGCAATGACCTTCCAAGAAGTGTAAA
JMFS050B06+           AGAGAAGGTGAAAACACGAGAGAACGCACAGGCATGCAATGACCTTCCAAGAAGTGTAAA
                      ____________________________________________________________
consensus             AGAGAAGGTGAAAACACGAGAGAACGCACAGGCATGCAATGACCTTCCAAGAAGTGTAAA
 
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JMFS053A01+           AATTTGGCACGTATCACATCAAAAACAGAGATTGTGCCATCCATTGAACCACAGGCAATT
JMFS053A04+           AATTTGGCACGTATCACATCAAAAACAGAGATTGTGCCATCCATTGAACCACAGGCAATT
JMFS050B06+           AATTTGGCACGTATCACATCAAAAACAGAGATTGTGCCATCCATTGAACCACAGGCAATT
                      ____________________________________________________________
consensus             AATTTGGCACGTATCACATCAAAAACAGAGATTGTGCCATCCATTGAACCACAGGCAATT
 
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JMFS053A01+           AGTCTCCCATCAGGACTCCAAGCAACAGATAGGACAAATTTCTTTGTGCTACTTTTCTCT
JMFS053A04+           AGTCTCCCATCAGGACTCCAAGCAACAGATAGGACAAATTTCTTTGTGCTACTTTTCTCT
JMFS050B06+           AGTCTCCCATCAGGACTCCAAGCAACAGATAGGACAAATTTCTTTGTGCTACTTTTCTCT
                      ____________________________________________________________
consensus             AGTCTCCCATCAGGACTCCAAGCAACAGATAGGACAAATTTCTTTGTGCTACTTTTCTCT
 
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JMFS053A01+           GTAGGCTTCAGACTTTCTGGACGAGGAATGGATAACGTCGAAATTAGTTGCCAATGAGTA
JMFS053A04+           GTAGGCTTCAGACTTTCTGGACGAGGAATGGATAACGTCGAAATTAGTTGCCAATGAGTA
JMFS050B06+           GTAGGCTTCAGACTTTCTGGACGAGGAATGGATAACGTCGAAATTAGTTGCCAATGAGTA
                      ____________________________________________________________
consensus             GTAGGCTTCAGACTTTCTGGACGAGGAATGGATAACGTCGAAATTAGTTGCCAATGAGTA
 
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JMFS053A01+           GTGTCCCATAATTTGACTGATAAACTACCACCTCCAGCTGCAGCCAGAGTGGTCCCCTGT
JMFS053A04+           GTGTCCCATAATTTGACTGATAAACTACCACCTCCAGCTGCAGCCAGAGTGGTCCCCTGT
JMFS050B06+           GTGTCCCATAATTTGACTGATAAACTACCACCTCCAGCTGCAGCCAGAGTGGTCCCCTGT
                      ____________________________________________________________
consensus             GTGTCCCATAATTTGACTGATAAACTACCACCTCCAGCTGCAGCCAGAGTGGTCCCCTGT
 
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JMFS053A01+           GGATTGAATGATAATTGCCAGACTTCGGAGGGAGGAGCTTCGAGGGTGGCAATGGTTCGG
JMFS053A04+           GGATTGAATGATAATTGCCAGACTTCGGAGGGAGGAGCTTCGAGGGTGGCAATGGTTCGG
JMFS050B06+           GGATTGAATGATAATTGCCAGACTTCGGAGGGAGGAGCTTCGAGGGTGGCAATGGTTCGG
                      ____________________________________________________________
consensus             GGATTGAATGATAATTGCCAGACTTCGGAGGGAGGAGCTTCGAGGGTGGCAATGGTTCGG
 
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JMFS053A01+           TTGGAATCAACGTCGAAGACGCGAATGTAGCTATCTATGGAAGCGGAAGCGGCGATCCGG
JMFS053A04+           TTGGAATCAACGTCGAAGACGCGAATGTAGCTATCTATGGAAGCGGAAGCGGCGATCCGG
JMFS050B06+           TTGGAATCAACGTCGAAGACGCGAATGTAGCTATCTATGGAAGCGGAAGCGGCGATCCGG
                      ____________________________________________________________
consensus             TTGGAATCAACGTCGAAGACGCGAATGTAGCTATCTATGGAAGCGGAAGCGGCGATCCGG
 
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JMFS053A01+           CGGGTGGGGTGTGTGGCCTCGTTATTTTCTCCTAGGCAATGTCCAGTGTTGGTTCGCAAA
JMFS053A04+           CGGGTGGGGTGGGTGGCCACGGAAACGACGCCGAGGCAATGTCCAGTGTTGGTTCGCAAA
JMFS050B06+           CGGGTGGGGTGGGTGGCCACGGAAACGACGCCGAGGCAATGTCCAGTGTTGGTTCGCAAA
                      ____________________________________________________________
consensus             CGGGTGGGGTGGGTGGCCACGGAAACGACGCCGAGGCAATGTCCAGTGTTGGTTCGCAAA
 
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JMFS053A01+           GAAG                                                        
JMFS053A04+           GAAGTGAGCTTCTCCGGGTCCCAGAGGCGCACAGTCTCGTCGAGGCCCCCGGTGAGGAGG
JMFS050B06+           GAAGTGAGCTTCTCCGGGTCCCAGAGGCGCACAGTCTCGTCGAGGCCCCCGGTGAGGAGG
                      ____________________________________________________________
consensus             GAAGTGAGCTTCTCCGGGTCCCAGAGGCGCACAGTCTCGTCGAGGCCCCCGGTGAGGAGG
 
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JMFS053A04+           AGCGGTGGAGCTCCGTCA                                          
JMFS050B06+           AGCGGTGGAGCTCCGTCACTGGGGCAGACCCACGACGCCGTCCATATGGAGTCGTCGTGG
                      ____________________________________________________________
consensus             AGCGGTGGAGCTCCGTCACTGGGGCAGACCCACGACGCCGTCCATATGGAGTCGTCGTGG