Contig 000421:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS042G07Sequence627000421 (2)ref|XP_009124282.1|1e-61PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
JMFS048C12Sequence613000421 (2)ref|XP_009124282.1|2e-59PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]

Alignment

This contig is upended


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JMFS042G07+                                            ATGCATTGCATGATATTCATGATCCAA
JMFS048C12+                                                          ATTCATGATCCAA
                      ____________________________________________________________
consensus                                              ATGCATTGCATGATATTCATGATCCAA
 
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JMFS042G07+           GACTGATTANAACCAATGTCCTGCAATGTATCTTTGATAAAACTCCAAGAGAGTCTATCG
JMFS048C12+           GACTGATTAAAACCAATGTCCTGCAATGTATCTTTGATAAAACTCCAAGAGAGTCTATCG
                      ____________________________________________________________
consensus             GACTGATTAAAACCAATGTCCTGCAATGTATCTTTGATAAAACTCCAAGAGAGTCTATCG
 
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JMFS042G07+           TATGCCTTCTCGAGGTCAACCTTTAGAACCATCCATCCTAATCTTCCTTTCTTATTTCCT
JMFS048C12+           TATGCCTTCTCGAGGTCAACCTTTAGAACCATCCATCCTAATCTTCCTTTCTTATTTCCT
                      ____________________________________________________________
consensus             TATGCCTTCTCGAGGTCAACCTTTAGAACCATCCATCCTAATCTTCCTTTCTTATTTCCT
 
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JMFS042G07+           AGGGAGTGTAGAATCTCCTGGTAAGCGAGAGTATTATCTACGATCTGTCGGCCATGGATA
JMFS048C12+           AGGGAGTGTAGAATCTCCTGGTAAGCGAGAGTATTATCTACGATCTGTCGGCCATGGATA
                      ____________________________________________________________
consensus             AGGGAGTGTAGAATCTCCTGGTAAGCGAGAGTATTATCTACGATCTGTCGGCCATGGATA
 
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JMFS042G07+           AAGCTTGACTGATGAGGACCCACTAGTTTACTGGAAATGTCTTTTAAGTGCAATGTCATA
JMFS048C12+           AAGCTTGACTGATGAGGACCCACTAGTTTACTGGAAATGTCTTTTAAGTGCAATGTCATA
                      ____________________________________________________________
consensus             AAGCTTGACTGATGAGGACCCACTAGTTTACTGGAAATGTCTTTTAAGTGCAATGTCATA
 
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JMFS042G07+           ATCTTGGTAATCAATTTATAGGCTACGTTGCACAAGCCAATGGGACAAAATTGCTTGACT
JMFS048C12+           ATCTTGGTAATCAATTTATAGGCTACGTTGCACAAGCCAATGGGACAAAATTGCTTGACT
                      ____________________________________________________________
consensus             ATCTTGGTAATCAATTTATAGGCTACGTTGCACAAGCCAATGGGACAAAATTGCTTGACT
 
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JMFS042G07+           TGATCGGGATGTTGCACCTTCGGGATGAGGGAGATTAGAGTGTCGTTGCAACCAGGAGGC
JMFS048C12+           TGATCGGGATGTTGCACCTTCGGGATGAGGGAGATTAGAGTGTCGTTGCAACCAGGAGGC
                      ____________________________________________________________
consensus             TGATCGGGATGTTGCACCTTCGGGATGAGGGAGATTAGAGTGTCGTTGCAACCAGGAGGC
 
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JMFS042G07+           AAAGTGCCGTTCTCAAAAAAGTCCTTGACAAAGATGCAGAGAGTTTCACTTGCAGTAGGC
JMFS048C12+           AAAGTGCCGCTCTCAAAAAAGTCCTTGACAAAGATGCAGAGAGTTTCACTTGCAGTAGGC
                      ____________________________________________________________
consensus             AAAGTGCCGTTCTCAAAAAAGTCCTTGACAAAGATGCAGAGAGTTTCACTTGCAGTAGGC
 
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JMFS042G07+           CAAGCCTTTTGGTAAAAACCTGCCGTAAAACCATCGGGGCCCGGTGCCTTGCAAGATGCC
JMFS048C12+           CAAGCCTTTTGGTAAAAACCTGCCGTAAAACCATCGGGGCCCGGTGCCTTGCAAGATGCC
                      ____________________________________________________________
consensus             CAAGCCTTTTGGTAAAAACCTGCCGTAAAACCATCGGGGCCCGGTGCCTTGCAAGATGCC
 
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JMFS042G07+           ATCTCCGAGAGGGCTGACTTGATTTCTTCCAAAGTAATAGGGGTGTAAACCGCCTGCCAA
JMFS048C12+           ATCTCCGAGAGGGCTGACTTGATTTCTTCCAAAGTAATAGGGGTGTAAACCGCCTGCCAA
                      ____________________________________________________________
consensus             ATCTCCGAGAGGGCTGACTTGATTTCTTCCAAAGTAATAGGGGTGTAAACCGCCTGCCAA
 
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JMFS042G07+           TCAGAATCAGAAATAGAGGGGAATAATCCATGATGTAGGTTTTGGATAGTATTCCTAGAA
JMFS048C12+           TCAGAATCAGAAATAGAGGGGAATAATCCATGATGTAGGTTTTGGATAGTATTCCTAGAA
                      ____________________________________________________________
consensus             TCAGAATCAGAAATAGAGGGGAATAATCCATGATGTAGGTTTTGGATAGTATTCCTAGAA