Contig 000420:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037J17Sequence562011593 (4)733000420 (2)ref|XP_009627095.1|4e-87PREDICTED: pumilio homolog 3-like isoform X2 [Nicotiana tomentosiformis]
JMFS047H01Sequence245000420 (2)

Alignment

This contig is upended


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rJMFF037J17+                                       GCAGTCCGTATGCATGTTGGCACAGGATCAA
                      ____________________________________________________________
consensus                                          GCAGTCCGTATGCATGTTGGCACAGGATCAA
 
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rJMFF037J17+          TATGGAAATTATGTCATTCAGCANGTATTAGAACATGGAAAGCCAGATGAACGGTCGGCT
                      ____________________________________________________________
consensus             TATGGAAATTATGTCATTCAGCANGTATTAGAACATGGAAAGCCAGATGAACGGTCGGCT
 
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rJMFF037J17+          ATAATTTGTCAGCTAATAGGACAAATAGTTCATATGAGCCAGCAAAAATTTGCCTCTAAT
                      ____________________________________________________________
consensus             ATAATTTGTCAGCTAATAGGACAAATAGTTCATATGAGCCAGCAAAAATTTGCCTCTAAT
 
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rJMFF037J17+          GTTGTGGAGAAGTGCTTAACTTTTGGAACACCCGAAGAGCGTCAAACCTTGGTAAATGAG
                      ____________________________________________________________
consensus             GTTGTGGAGAAGTGCTTAACTTTTGGAACACCCGAAGAGCGTCAAACCTTGGTAAATGAG
 
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rJMFF037J17+          ATGCTTGGCTCCAATGACGAGAATGAACCACTTCAGGCGATGATGAAAGATCAATTTGCA
                      ____________________________________________________________
consensus             ATGCTTGGCTCCAATGACGAGAATGAACCACTTCAGGCGATGATGAAAGATCAATTTGCA
 
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rJMFF037J17+          AACTATGTCGTACAAAAGGTGCTGGAGACTTGCGATGACCAGCAGCTTGAACTTATCCTC
                      ____________________________________________________________
consensus             AACTATGTCGTACAAAAGGTGCTGGAGACTTGCGATGACCAGCAGCTTGAACTTATCCTC
 
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rJMFF037J17+          AACCGAATAAAGGTTCACTTGAATGCTCTGAAGAAATATACCTACGGAAAACATATAGTT
                      ____________________________________________________________
consensus             AACCGAATAAAGGTTCACTTGAATGCTCTGAAGAAATATACCTACGGAAAACATATAGTT
 
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rJMFF037J17+          GCCCGGGTCGAGAAACTTGTTGCTGCTGGGGAGAGGAGGATCATGATCCTGTCATTGAAT
                      ____________________________________________________________
consensus             GCCCGGGTCGAGAAACTTGTTGCTGCTGGGGAGAGGAGGATCATGATCCTGTCATTGAAT
 
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rJMFF037J17+          TCTGCACAGATGTAGGAAGGGAATTGCAGAACTAACGACAACACCAGTATGCGTTTCTCT
JMFS047H01+                                                                      T
                      ____________________________________________________________
consensus             TCTGCACAGATGTAGGAAGGGAATTGCAGAACTAACGACAACACCAGTATGCGTTTCTCT
 
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rJMFF037J17+          CTTGTTTCTTCTCGTATCCTGCTTTAGCTCGATCTTAGGCTCTTAGCTGTATCGGTTAAA
JMFS047H01+           CTTGTTTCTTCTCGTATCGTGCTTTAGCTCGATGTTAGGCTCTTAGCTGTATCGGTTAAA
                      ____________________________________________________________
consensus             CTTGTTTCTTCTCGTATCGTGCTTTAGCTCGATGTTAGGCTCTTAGCTGTATCGGTTAAA
 
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rJMFF037J17+          TATGGGCGTTTAGCGCCCGTTAGAATAGAACTTGTGAGTTGTACATTGTTAGATTGAGGA
JMFS047H01+           TATGGGCGTTTAGCGCCCGTTAGAATAGAACTTGTGAGTTGTACATTGTTAGATTGAGGA
                      ____________________________________________________________
consensus             TATGGGCGTTTAGCGCCCGTTAGAATAGAACTTGTGAGTTGTACATTGTTAGATTGAGGA
 
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rJMFF037J17+          TAGAGTTAGAATGAGATTTAGCCATAGCCCAGATGGTGAACATGCCTGATGCCCCTACAG
JMFS047H01+           TAGAGTTAGAATGAGATTTAGCCATAGCCCAGATGGTGAACATGCCTGATGCCCCTACAG
                      ____________________________________________________________
consensus             TAGAGTTAGAATGAGATTTAGCCATAGCCCAGATGGTGAACATGCCTGATGCCCCTACAG
 
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rJMFF037J17+          GAAGGAGATCACAGGTACTGTACAAGTTTTAAGAT                         
JMFS047H01+           GAAGGAGATCACAGGTGCTGTACAAGTTTTAAGATTGTAAAGAGGAAAGCCNCTGGCTGT
                      ____________________________________________________________
consensus             GAAGGAGATCACAGGTGCTGTACAAGTTTTAAGATTGTAAAGAGGAAAGCCNCTGGCTGT