Contig 000419:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012C04Sequence541001609 (7)607000419 (8)ref|XP_009104154.1|8e-19PREDICTED: serine/threonine-protein kinase SRK2A [Brassica rapa] emb|CDY46190.1|
JMFF012I21Sequence551001609 (7)ref|XP_009348751.1|8e-100PREDICTED: serine/threonine-protein kinase SRK2A [Pyrus x bretschneideri]682000419 (8)gb|KDO50087.1|7e-41hypothetical protein CISIN_1g0187341mg, partial [Citrus sinensis] gb|KDO50088.1|
JMFF028B09Sequence551001609 (7)ref|XP_009348751.1|7e-105PREDICTED: serine/threonine-protein kinase SRK2A [Pyrus x bretschneideri]765000419 (8)ref|XP_003540159.1|6e-50PREDICTED: serine/threonine-protein kinase SRK2A-like [Glycine max]
JMFF039L08Sequence540001609 (7)679000419 (8)ref|XP_006384980.1|1e-39hypothetical protein POPTR_0004s22770g [Populus trichocarpa] gb|ERP62777.1| hypo
JMFF040J15Sequence681000419 (8)ref|XP_003540159.1|7e-68PREDICTED: serine/threonine-protein kinase SRK2A-like [Glycine max]
JMFF050E24Sequence631001609 (7)emb|CAE54076.1|3e-22serine/threonine-protein kinase [Fagus sylvatica]645000419 (8)emb|CBI29763.3|2e-18unnamed protein product [Vitis vinifera]
JMFS047D07Sequence549000419 (8)
JMSF010A14Sequence228001609 (7)720000419 (8)ref|XP_009776074.1|5e-58PREDICTED: serine/threonine-protein kinase SRK2A [Nicotiana sylvestris] gb|AAL89

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+                                             GAAGACCATGACGATCCTAAGAACT
rJMFF028B09+                                                                 GAACT
                      ____________________________________________________________
consensus                                                GAAGACCATGACGATCCTAAGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          TCAGGAAAACTATTCAGCGTATAATGTCTGTGCAGTACAAGATT-CCCGACTATGTCCAT
rJMSF010A14+                       TCAGCGTATAATGTCTGTGCAGTACAAGATT-CCCGACTATGTCCAT
rJMFF028B09+          TCAGGAAAACTATTCAGCGTATAATGTCTGTGCAGTACAAGATTCCCCGACTATGTCCAT
                      ____________________________________________________________
consensus             TCAGGAAAACTATTCAGCGTATAATGTCTGTGCAGTACAAGATT-CCCGACTATGTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          ATTTCACAGGATTGTAGGCACCTTCTTTCTCGGATATTTGTCGCTAATCCTGCAAGGAGG
rJMSF010A14+          ATTTCACAGGATTGTAGGCACCTTCTTTCTCGGATATTTGTCGCTAATCCTGCAAGGAGG
rJMFF028B09+          ATTTCACAGGATNGTAGGCACCTTCTTTCTCGGATATTTGTCGCTAATCCTGCAAGGAGG
rJMFF012I21+                               CTTCTTTCTCGGATATTTGTCGCTAATCCTGCAAGGAGG
rJMFF039L08+                                  CTTTCTCGGATATTTGTCGCTAATCCTGCAAGGAGG
                      ____________________________________________________________
consensus             ATTTCACAGGATTGTAGGCACCTTCTTTCTCGGATATTTGTCGCTAATCCTGCAAGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          ATAACCATTAAAGAGATCAAGTCCCACCCGTGGTTTTTGAAGAATCTGCCAAGAGAATTA
rJMSF010A14+          ATAACCATTAAAGAGATCAAGTCCCACCCGTGGTTTTTGAAGAATCTGCCAAGAGAATTA
rJMFF028B09+          ATAACCATTAAAGAGATCAAGTCCCACCCGTGGTTTTTGAAGAATCTGCCAAGAGAATTA
rJMFF012I21+          ATAACCATTAAAGAGATCAAGTCCCACCCGTGGTTTTTGAAGAATCTGCCAAGAGAATTA
rJMFF012C04+                                          GTTTTTGAAGAATCTGCCATGAGAATTA
rJMFF039L08+          ATNACCATTAAAGAGATCAAGTCCCACCCGTGGTTTTTGAAGAATCTGCCAAGAGAATTA
rJMFF050E24+                                                                GAATTA
                      ____________________________________________________________
consensus             ATAACCATTAAAGAGATCAAGTCCCACCCGTGGTTTTTGAAGAATCTGCCAAGAGAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
rJMSF010A14+          ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
rJMFF028B09+          ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
rJMFF012I21+          ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
rJMFF012C04+          ACGGAAGTGGCACAAGCAGCCTATTNCAGAAGAGAAAACCNGACCTTTTCCCTTCAAAGC
rJMFF039L08+          ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
rJMFF050E24+          ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
                      ____________________________________________________________
consensus             ACGGAAGTGGCACAAGCAGCCTATTACAGAAGAGAAAACCCGACCTTTTCCCTTCAAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
rJMSF010A14+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
rJMFF028B09+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
rJMFF012I21+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
rJMFF012C04+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTNGTTCC
rJMFF039L08+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
rJMFF050E24+          GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
                      ____________________________________________________________
consensus             GCGGAGGAGATCATGAAAATTGTGGACGAAGCCAAGGCTCCCCCTCCAGCTTCTCGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          ATGGGAGGTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
rJMSF010A14+          ATGGGAGGTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
rJMFF028B09+          ATGGGAGGTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
rJMFF012I21+          ATGGGAGGTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
rJMFF012C04+          ATGGGAGNTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGNCGTAGAAGAA
rJMFF039L08+          ATGGGAGGTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
rJMFF050E24+          ATGGGAGGTTTTGGCTGGGAAGNCGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
JMFS047D07-                                                              GTAGAAGAA
                      ____________________________________________________________
consensus             ATGGGAGGTTTTGGCTGGGAAGACGGAGAGGAAGAGAAGAAAGAAGGTGACGTAGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
rJMSF010A14+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
rJMFF028B09+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
rJMFF012I21+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
rJMFF012C04+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGCCGAAGATGAAGAGGAGGNCGAA
rJMFF039L08+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
rJMFF050E24+          GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
JMFS047D07-           GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
                      ____________________________________________________________
consensus             GAAGAAGAAGAGGAAGAGGAAGAACAAGAACAAGAAGACGAAGATGAAGAGGAGGACGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
rJMSF010A14+          GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
rJMFF028B09+          GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
rJMFF012I21+          GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
rJMFF012C04+          GAAGACGGAGAAGATGAATGCGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
rJMFF039L08+          GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
rJMFF050E24+          GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
JMFS047D07-           GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
                      ____________________________________________________________
consensus             GAAGACGGAGAAGATGAATACGAAAAGCAACTGAAGCGAGCACACGAGAGTGGAGAAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
rJMSF010A14+          CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
rJMFF028B09+          CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
rJMFF012I21+          CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
rJMFF012C04+          CGCGTGNCTTGAGCCCGCCCACCCACCCACCCACCCATTNGCATTTGNTGCTCGTAGTGA
rJMFF039L08+          CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
rJMFF050E24+          CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
JMFS047D07-           CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
                      ____________________________________________________________
consensus             CGCGTGACTTGAGCCCGCCCACCCACCCACCCACCCATTCGCATTTGCTGCTCGTAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          AGTTTTGATATCGGAATGGTTTGTGTAGAATTGGTTTGAACTTTCAGGTATGGAATTAAA
rJMSF010A14+          AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
rJMFF028B09+          AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
rJMFF012I21+          AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
rJMFF012C04+          AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
rJMFF039L08+          AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
rJMFF050E24+          AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
JMFS047D07-           AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
                      ____________________________________________________________
consensus             AGTTTTGATATCGGAATGGTTTGTGTAAAATTGGTTTGAACTTTCAGGTATGGAATTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF040J15+          TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATG   
rJMSF010A14+          TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
rJMFF028B09+          TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
rJMFF012I21+          TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
rJMFF012C04+          TAAGGTTTGTNCCTTTNTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
rJMFF039L08+          TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
rJMFF050E24+          TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
JMFS047D07-           TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
                      ____________________________________________________________
consensus             TAAGGTTTGTACCTTTCTGGAGTCTTGAGAGTGTGAATATTATTTCCATAGGAAATGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010A14+          TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
rJMFF028B09+          TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
rJMFF012I21+          TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
rJMFF012C04+          TGCAATATTNGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTNTAAG
rJMFF039L08+          TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
rJMFF050E24+          TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
JMFS047D07-           TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
                      ____________________________________________________________
consensus             TGCAATATTGGAGTTGTATCTAGGATTGGAAGTGCAGCTTTAAGAAGCAAGAACTCTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010A14+          ACC                                                         
rJMFF028B09+          ACCTGTGTTTGGTGTTTCCATTTGCTAGAAAAT                           
rJMFF012I21+          ACCTGTGTTTGGTGTTTCCATTTGCTAGAAAATAGAAGAAAAT                 
rJMFF012C04+          ACCTGTGTCTGGTGTTTCCATTTGC                                   
rJMFF039L08+          ACCTGTGTTTGGTGTTTCCATTTGCTAGAAAATAGAAGAAAAT                 
rJMFF050E24+          ACCTGTGTTTGGTGTTTCCATTTGCTAGAAAATAGAAGAAAATTGAATGATTGTGTGGAA
JMFS047D07-           ACCTGTGTTTGGTGTTTCCATTTGCTAGAAAATAGAAGAAAATTGAATGATTGTGTGGAA
                      ____________________________________________________________
consensus             ACCTGTGTTTGGTGTTTCCATTTGCTAGAAAATAGAAGAAAATTGAATGATTGTGTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E24+          A                                                           
JMFS047D07-           ACTAAAATGTCTTCCCATGTACTAAATATTTGTAGGAATTAGTGTACCCAAGTTAGTAAA
                      ____________________________________________________________
consensus             ACTAAAATGTCTTCCCATGTACTAAATATTTGTAGGAATTAGTGTACCCAAGTTAGTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS047D07-           ACCAAAACCATATCAAACATTGTGTAGGATGAAATGCTTACCACGGTCAAAAGTTATAGT
                      ____________________________________________________________
consensus             ACCAAAACCATATCAAACATTGTGTAGGATGAAATGCTTACCACGGTCAAAAGTTATAGT