Contig 000413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS012A10Sequence637000413 (4)
JMFS019A02Sequence543000413 (4)
JMFS042B10Sequence628000413 (4)
JMFS162D05Sequence532000413 (4)

Alignment

This contig is upended


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JMFS012A10+                                                                    CTA
                      ____________________________________________________________
consensus                                                                      CTA
 
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JMFS012A10+           GCAACGCACCAAGGCCAACTGCTATAACATCCTCCCTTTGCCTCGGGGTTAGGGATGCCA
JMFS042B10+                                           TCCCTTTGCCTCGGGGTTAGGGATGCCA
                      ____________________________________________________________
consensus             GCAACGCACCAAGGCCAACTGCTATAACATCCTCCCTTTGCCTCGGGGTTAGGGATGCCA
 
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JMFS162D05+                             TCGGCGACCCCCGTGTGTTAATCTGGCCTGCAGTTGAACGCT
JMFS012A10+           CAAGGTCTGCAAGGTACTTCGGCGACCNCCGTGTGTTAATCTGGCCTGCAGTTGAACGCT
JMFS019A02+                                                            AGTTGAACGCT
JMFS042B10+           CAAGGTCTGCAAGGTACTTCGGCGACCNCCGTGTGTTAATCTGGCCTGCAGTTGAACGCT
                      ____________________________________________________________
consensus             CAAGGTCTGCAAGGTACTTCGGCGACCCCCGTGTGTTAATCTGGCCTGCAGTTGAACGCT
 
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JMFS162D05+           GCACACGCGGTGCTTCCATCTCCACATCGTCACCCAACACCAACGGCGGGGTCTGGAAAA
JMFS012A10+           GCACACGCGGTGCTTCCATCTCCACATCGTCACCCAACACCAACGGCGGGGTCTGGAAAA
JMFS019A02+           GCACACGCGGTGCTTCCATCTCCACATCGTCACCCAACACCAACGGCGGGGTCTGGAAAA
JMFS042B10+           GCACACGCGGTGCTTCCATCTCCACATCGTCACCCAACACCAACGGCGGGGTCTGGAAAA
                      ____________________________________________________________
consensus             GCACACGCGGTGCTTCCATCTCCACATCGTCACCCAACACCAACGGCGGGGTCTGGAAAA
 
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JMFS162D05+           CGTCATCCTCCCCGCTTTCCCCGTCACTTAGGTAGACTGGGTGCTGGTCATTATTGCCTT
JMFS012A10+           CGTCATCCTCCCCGCTTTCCCCGTCACTTAGGTAGACTGGGTGCTGGTCATTATTGCCTT
JMFS019A02+           CGTCATCCTCCCCGCTTTCCCCGTCACTTAGGTAGACTGGGTGCTGGTCATTATTGCCTT
JMFS042B10+           CGTCATCCTCCCCGCTTTCCCCGTCACTTAGGTAGACTGGGTGCTGGTCATTATTGCCTT
                      ____________________________________________________________
consensus             CGTCATCCTCCCCGCTTTCCCCGTCACTTAGGTAGACTGGGTGCTGGTCATTATTGCCTT
 
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JMFS162D05+           TCTGCCCCAATCGCCGCGCCACCCTATTTCGTGCCGACACCCTGGCCGCTACCCCCGACG
JMFS012A10+           TCTGCCCCAATCGCCGCGCCACCCTATTTCGTGCCGACACCCTGGCCGCTACCCCCGACG
JMFS019A02+           TCTGCCCCAATCGCCGCGCCACCCTATTTCGTGCCGACACCCTGGCCGCTACCCCCGACG
JMFS042B10+           TCTGCCCCAATCGCCGCGCCACCCTATTTCGTGCCGACACCCTGGCCGCTACCCCCGACG
                      ____________________________________________________________
consensus             TCTGCCCCAATCGCCGCGCCACCCTATTTCGTGCCGACACCCTGGCCGCTACCCCCGACG
 
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JMFS162D05+           CAGCCTGGTTCGGACGGACCACGGAACTCCGGCGACGGGTCCGTCGTTTGAACGCTCGGG
JMFS012A10+           CAGCCTGGTTCGGACGGACCACGGAACTCCGGCGACGGGTCCGTCGTTTGAACGCTCGGG
JMFS019A02+           CAGCCTGGTTCGGACGGACCACGGAACTCCGGCGACGGGTCCGTCGTTTGAACGCTCGGG
JMFS042B10+           CAGCCTGGTTCGGACGGACCACGGAACTCCGGCGACGGGTCCGTCGTTTGAACGCTCGGG
                      ____________________________________________________________
consensus             CAGCCTGGTTCGGACGGACCACGGAACTCCGGCGACGGGTCCGTCGTTTGAACGCTCGGG
 
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JMFS162D05+           AGACTGCCGGAGGGGTCAAAGGCGACAATTGATGGCCACCCCTTCCACGCTTCGTCCGGC
JMFS012A10+           AGACTGCCGGAGGGGTCAAAGGCGACAATTGATGGCCACCCCTTCCACGCTTCGTCCGGC
JMFS019A02+           AGACTGCCGGAGGGGTCAAAGGCGACAATTGATGGCCACCCCTTCCACGCTTCGTCCGGC
JMFS042B10+           AGACTGCCGGAGGGGTCAAAGGCGACAATTGATGGCCACCCCTTCCACGCTTCGTCCGGC
                      ____________________________________________________________
consensus             AGACTGCCGGAGGGGTCAAAGGCGACAATTGATGGCCACCCCTTCCACGCTTCGTCCGGC
 
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JMFS162D05+           GAAAACACCCACTAGACCGGGCCATGCAAGCTGTTCAGATGAGCGCTAGACTTCCGATGA
JMFS012A10+           GAAAACACCCACTAGACCGGGCCATGCAAGCTGTTCAGATGAGCGCTAGACTTCCGATGA
JMFS019A02+           GAAAACACCCACTAGACCGGGCCATGCAAGCTGTTCAGATGAGCGCTAGACTTCCGATGA
JMFS042B10+           GAAAACACCCACTAGACCGGGCCATGCAAGCTGTTCAGATGAGCGCTAGACTTCCGATGA
                      ____________________________________________________________
consensus             GAAAACACCCACTAGACCGGGCCATGCAAGCTGTTCAGATGAGCGCTAGACTTCCGATGA
 
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JMFS162D05+           GGTTCACTAGCTCGCCGCGGGTTGGGAAGCTTTTGTCCCGATTGAGCCGAAGCGGAACAA
JMFS012A10+           GGTTCACTAGCTCGCCGCGGGTTGGGAAGCTTTTGTCCCGATTGAGCCGAAGCGGAACAA
JMFS019A02+           GGTTCACTAGCTCGCCGCGGGTTGGGAAGCTTTTGTCCCGATTGAGCCGAAGCGGAACAA
JMFS042B10+           GGTTCACTAGCTCGCCGCGGGTTGGGAAGCTTTTGTCCCGATTGAGCCGAAGCGGAACAA
                      ____________________________________________________________
consensus             GGTTCACTAGCTCGCCGCGGGTTGGGAAGCTTTTGTCCCGATTGAGCCGAAGCGGAACAA
 
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JMFS162D05+           AATCTCCAGGGTTGAGAAAGGCTCTCCGCAATTGAGTCGAAGAGCTACGGAATCGCCTCC
JMFS012A10+           AATCTCCAGGGTTGAGAAAGGCTCTCCGCAATTGAGTCGAAGAGCTACGGAATCGCCTCC
JMFS019A02+           AATCTCCAGGGTTGAGAAAGGCTCTCCGCAATTGAGTCGAAGAGCTACGGAATCGCCTCC
JMFS042B10+           AATCTCCAGGGTTGAGAAGGGCTCTCCGCAATTGAGTCGAAGAGCTACGGAATCGCCTCC
                      ____________________________________________________________
consensus             AATCTCCAGGGTTGAGAAAGGCTCTCCGCAATTGAGTCGAAGAGCTACGGAATCGCCTCC
 
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JMFS162D05+           CTGAACGTTG                                                  
JMFS012A10+           CTGAACGTTGGAATTTTGGAATGGGTTGACAGAG                          
JMFS019A02+           CTGAACGTTGGAATTTTGGAATGGGTTGACAGAGATCGAAAGAGGCGGAGGT        
JMFS042B10+           CTGAACGTTGGAATTTTGGAATGGGTTGACAGAGATCGAAAGAGGCGGAGGTTGATAAGG
                      ____________________________________________________________
consensus             CTGAACGTTGGAATTTTGGAATGGGTTGACAGAGATCGAAAGAGGCGGAGGTTGATAAGG