Contig 000411:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF035A14+                                CTAAACAGCACATGAAAAAAGTTACTCCTAGCGGCTAAT
                      ____________________________________________________________
consensus                                  CTAAACAGCACATGAAAAAAGTTACTCCTAGCGGCTAAT
 
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JMSF035A14+           ATACACCGGTGGACACCAACCGTAGTCCCCTCTACAACAATATCAGCATCACTAAAATCT
                      ____________________________________________________________
consensus             ATACACCGGTGGACACCAACCGTAGTCCCCTCTACAACAATATCAGCATCACTAAAATCT
 
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JMSF035A14+           GAAGTTGTATCAGACAAGAGTTGTTCCAAACTATTGCTGAGCTTACTTAAACTGAAAATC
                      ____________________________________________________________
consensus             GAAGTTGTATCAGACAAGAGTTGTTCCAAACTATTGCTGAGCTTACTTAAACTGAAAATC
 
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JMSF035A14+           TCGAGACTAGATCCACCCGAAGATGGCACAATCTGCCCAATCGACCCATTCGATGTCTGT
JMFS039G08+                                                     GACCCATTCGATGTCTGT
                      ____________________________________________________________
consensus             TCGAGACTAGATCCACCCGAAGATGGCACAATCTGCCCAATCGACCCATTCGATGTCTGT
 
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JMSF035A14+           GATGATGAAGTGAAACTTATGGATGATGATGGTTCAAAAGAACTACCCATATCTCCTCCA
JMFS039G08+           GATGATGAAGTGAAACTTATGGATGATGATGGTTCAAAAGAACTACCCATATCTCCTCCA
                      ____________________________________________________________
consensus             GATGATGAAGTGAAACTTATGGATGATGATGGTTCAAAAGAACTACCCATATCTCCTCCA
 
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JMSF035A14+           ATCCTATATCAGTAAATTCAATTTCCTTTTCCTTTTCCTTTTCCTATTCCTATTCCTATT
JMFS039G08+           ATCCTATATCAGTAAATTCAATTTCCTTTTCCTTTTCCTTTTCCTATTCCTATTCCTATT
                      ____________________________________________________________
consensus             ATCCTATATCAGTAAATTCAATTTCCTTTTCCTTTTCCTTTTCCTATTCCTATTCCTATT
 
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JMSF035A14+           CTTTACAGTATCAATGCCATCCTCAATATATGCTCAATCAACACCTAATTCTACTTCAGA
JMFS039G08+           CTTTACAGTATCAATGCCATCCTCAATATATGCTCAATCAACACCTAATTCTACTTCAGA
                      ____________________________________________________________
consensus             CTTTACAGTATCAATGCCATCCTCAATATATGCTCAATCAACACCTAATTCTACTTCAGA
 
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JMSF035A14+           ATTTCTGGCCTTACATGATTGATAGAAAAAATTTCAAGAAACAAAATCAACCCATCAGAG
JMFS039G08+           ATTTCTGGCCTTACATGATTGATAGAAAAAATTTCAAGAAACAAAATCAACCCATCAGAG
                      ____________________________________________________________
consensus             ATTTCTGGCCTTACATGATTGATAGAAAAAATTTCAAGAAACAAAATCAACCCATCAGAG
 
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JMSF035A14+           CTTTAAACTAACATGAATGAATTATGAATCCCTTATCCAGTAATCTTTCAAAATACATAT
JMSF005B18+                                               CCAGTANTCTTTCAAAATACATAT
JMSF004O13+                                               CCAGTAATCTTTCAAAATACATAT
JMFS039G08+           CTTTAAACTAACATGAATGAATTATGAATCCCTTATCCAGTAATCTTTCAAAATACATAT
                      ____________________________________________________________
consensus             CTTTAAACTAACATGAATGAATTATGAATCCCTTATCCAGTAATCTTTCAAAATACATAT
 
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JMSF035A14+           ATAAACACACAGCAAGATTTACAACATACTCTGCAAG-AAACAGAAACCCACGACAGCAG
JMSF005B18+           ATAAACACACAGCAAGATTTACAACATACTCTGCAAG-AAACAGAAACCCACGACAGCAG
JMSF004O13+           ATAAACACACAGCAAGATTTACAACATACTCTGCAAGAAAACAGAAACCCACGACAGCAG
JMFS039G08+           ATAAACACACAGCAAGATTTACAACATACTCTGCAAG-AAACAGAAACCCACGACAGCAG
                      ____________________________________________________________
consensus             ATAAACACACAGCAAGATTTACAACATACTCTGCAAG-AAACAGAAACCCACGACAGCAG
 
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JMSF035A14+           ATCCAAAAGGCCAAGACTTGAACTGGGAGAAGGTGAAACTGATCAAAACAATAAAATTAA
JMSF005B18+           ATCCAAAAGGCCAAGACTTGAACTGGGAGAAGGTGAAACTGATCAAAACAATAAAATTAA
JMSF004O13+           ATCCAAAAGGCCAAGACTTGAACTGGGAGAAGGTGAAACTGATCAAAACAATAAAATTAA
JMFS039G08+           ATCCAAAAGGCCAAGACTTGAACTGGGAGAAGGTGAAACTGATCAAAACAATAAAATTAA
                      ____________________________________________________________
consensus             ATCCAAAAGGCCAAGACTTGAACTGGGAGAAGGTGAAACTGATCAAAACAATAAAATTAA
 
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JMSF035A14+           TACCCAGTAATTGCTTTCAATTTCAAAGCAGGCTAGAACATCTGTCTTTGCCAAGATCAA
JMSF005B18+           TACCCAGTAATTGCTTTCAATTTCAAAGCAGGCTAGAACATCTGTCTTTGCCAAGATCAA
JMSF004O13+           TACCCAGTAATTGCTTTCAATTTCAAAGCAGGCTAGAACATCTGTCTTTGCCAAGATCAA
JMFS039G08+           TACCCAGTAATTGCTTTCAATTTCAAAGCAGGCTAGAACATCTGTCTTTGCCAAGATCAA
                      ____________________________________________________________
consensus             TACCCAGTAATTGCTTTCAATTTCAAAGCAGGCTAGAACATCTGTCTTTGCCAAGATCAA
 
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JMSF035A14+           ACAG                                                        
JMSF005B18+           ACAGAACCCAAACCCATCAAAGATTAGAGCTT                            
JMSF004O13+           ACAGAACCCAAACCCATCAAAGATTAGAGCTT                            
JMFS039G08+           ACAGAACCCAAACCCATCAAAGATTAGAGCTTGGAAATAAAGGAAAAAATTTAGCTGCCG
                      ____________________________________________________________
consensus             ACAGAACCCAAACCCATCAAAGATTAGAGCTTGGAAATAAAGGAAAAAATTTAGCTGCCG
 
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JMFS039G08+           CCGCTACTATGAGTCGAAAACGGACAAAGATCGGCCCCACTTGTCCCCTGGGAAGTTTCG
                      ____________________________________________________________
consensus             CCGCTACTATGAGTCGAAAACGGACAAAGATCGGCCCCACTTGTCCCCTGGGAAGTTTCG