Contig 000404:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS031F01Sequence365000404 (2)ref|XP_009774491.1|2e-68PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Nicotiana sylvestris] ref|XP
JMFS056F11Sequence626000404 (2)ref|XP_006360025.1|5e-131PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like isoform X1 [Solanum tube

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS056F11+ ATAGCAATCCTTATATTNTGCAGGAA
                      ____________________________________________________________
consensus ATAGCAATCCTTATATTNTGCAGGAA
 
. : . : . : . : . : . :
JMFS056F11+ TAAAGCGATACTGCTGTTTTAAAGTATCAACTGTGGAATATTTTGAGGCAGCCTCAATCT
                      ____________________________________________________________
consensus TAAAGCGATACTGCTGTTTTAAAGTATCAACTGTGGAATATTTTGAGGCAGCCTCAATCT
 
. : . : . : . : . : . :
JMFS056F11+ TTACAGGATTCCTTAGACAAGCCCTCTGGAGTTTTTTCACCTTTTTGGTCATGGTGGCAG
                      ____________________________________________________________
consensus TTACAGGATTCCTTAGACAAGCCCTCTGGAGTTTTTTCACCTTTTTGGTCATGGTGGCAG
 
. : . : . : . : . : . :
JMFS056F11+ AAAACAAATATGTCCTTCTCTCACGGGGAGTATTATTCAAAATATCATCAAGTGCTTTTT
                      ____________________________________________________________
consensus AAAACAAATATGTCCTTCTCTCACGGGGAGTATTATTCAAAATATCATCAAGTGCTTTTT
 
. : . : . : . : . : . :
JMFS056F11+ CAAAATCCTCATTCAGTAACCTATCTGCCTCATCCAACACCAAATACTTCAAGGCGCGGA
JMFS031F01+ GCGGA
                      ____________________________________________________________
consensus CAAAATCCTCATTCAGTAACCTATCTGCCTCATCCAACACCAAATACTTCAAGGCGCGGA
 
. : . : . : . : . : . :
JMFS056F11+ GTGAAAAGCCTTTGGTATTCGACAGATGATCTAAGAGCCGACCAGGTGTTGCCACAAGAA
JMFS031F01+ GTGAAAAGCCTTTGGTATTCGACAGATGATCTAAGAGCCGACCAGGTGTTGCCACAAGAA
                      ____________________________________________________________
consensus GTGAAAAGCCTTTGGTATTCGACAGATGATCTAAGAGCCGACCAGGTGTTGCCACAAGAA
 
. : . : . : . : . : . :
JMFS056F11+ TGTGTGGTCGTTTTCCAAGCATAATGCTCTGCTGTACTTGATCAAGTCCTCCAACAAGCG
JMFS031F01+ TGTGTGGTCGTTTTCCAAGCATAATGCTCTGCTGTACTTGATCAAGTCCTCCAACAAGCG
                      ____________________________________________________________
consensus TGTGTGGTCGTTTTCCAAGCATAATGCTCTGCTGTACTTGATCAAGTCCTCCAACAAGCG
 
. : . : . : . : . : . :
JMFS056F11+ CTGCACATTTGACACCAATTCCAGCTCCTAAAGCTTCAAACTGTTGCGAAATTTGAATAG
JMFS031F01+ CTGCACATTTGACACCAATTCCAGCTCCTAAAGCTTCAAACTGTTGCGAAATTTGAATAG
                      ____________________________________________________________
consensus CTGCACATTTGACACCAATTCCAGCTCCTAAAGCTTCAAACTGTTGCGAAATTTGAATAG
 
. : . : . : . : . : . :
JMFS056F11+ CAAGCTCCCGTGTAGGAGACAGCACGCATGCAAAGAACGCTTGAGGAGCATCTATGAGCG
JMFS031F01+ CAAGCTCCCGTGTAGGAGACAGCACGCATGCAAAGAACGCTTGAGGAGCATCTATGAGCG
                      ____________________________________________________________
consensus CAAGCTCCCGTGTAGGAGACAGCACGCATGCAAAGAACGCTTGAGGAGCATCTATGAGCG
 
. : . : . : . : . : . :
JMFS056F11+ CCTGCAGTATTGGAATTGCAAAAGCTCCAGTCTTTCCTGAGCCTGTCTGTGCAAGCCCAA
JMFS031F01+ CCTGCAGTATTGGAATTGCAAAAGCTCCAGTCTTTCCTGAGCCTGTCTGTGCAAGCCCAA
                      ____________________________________________________________
consensus CCTGCAGTATTGGAATTGCAAAAGCTCCAGTCTTTCCTGAGCCTGTCTGTGCAAGCCCAA
 
. : . : . : . : . : . :
JMFS056F11+ TTATATCTTTCCCTTCAAGAGCATGAGGAATAGTCTCTGCTTGAATCTTAGAAGCGGTTT
JMFS031F01+ TTATATCTTTCCCTTCAAGAGCATGAGGAATAGTCTCTGCTTGAATCTTAGAAGCGGTTT
                      ____________________________________________________________
consensus TTATATCTTTCCCTTCAAGAGCATGAGGAATAGTCTCTGCTTGAATCTTAGAAGCGGTTT