Contig 000403:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+                               GAATCGATTCCTCCTCCATGTGAATTGACCATAGTGCCCA
JMFS031C09+                               GAATCGATTCCTCCTCCATGTGAATTGACCATAGTGCCCA
                      ____________________________________________________________
consensus                                 GAATCGATTCCTCCTCCATGTGAATTGACCATAGTGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           AGTACAGAAACTCGGAGCTAGGTCGAGACGGCATCTGTAGCTTCGGAATGCGGCGATTCC
JMFS031C09+           AGTACAGAAACTCGGAGCTAGGTCGAGACGGCATCTGTAGCTTCGGAATGCGGCGATTCC
                      ____________________________________________________________
consensus             AGTACAGAAACTCGGAGCTAGGTCGAGACGGCATCTGTAGCTTCGGAATGCGGCGATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           CGCCACTCCCCCCATTATTGCAGTAACTTAATCGGGTACTGTAATCGGATCTATGCGTTT
JMFS031C09+           CGCCACTCCCCCCATTATTGCAGTAACTTAATCGGGTACTGTAATCGGATCTATGCGTTT
                      ____________________________________________________________
consensus             CGCCACTCCCCCCATTATTGCAGTAACTTAATCGGGTACTGTAATCGGATCTATGCGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           TCGAGTCACTGGAAGAAGAACGAAGATTCCTCCTCCGCCTCCGGCGATGAATCAAGACGG
JMFS031C09+           TCGAGTCACTGGAAGAAGAACGAAGATTCCTCCTCCGCCTCCGGCGATGAATCAAGACGG
                      ____________________________________________________________
consensus             TCGAGTCACTGGAAGAAGAACGAAGATTCCTCCTCCGCCTCCGGCGATGAATCAAGACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           CGATCAGGATAAAAATAACCGCCGCGGCGACGCAGGAGATAGCAGTACCAACGAGCTTCG
JMFS031C09+           CGATCAGGATAAAAATAACCGCCGCGGCGACGCAGGAGATAGCAGTACCAACGAGCTTCG
                      ____________________________________________________________
consensus             CGATCAGGATAAAAATAACCGCCGCGGCGACGCAGGAGATAGCAGTACCAACGAGCTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           ACGAAACCGGCTTCTCCGGCTGGGGGCGGGGGACAATGAGGGAGGAGATATTCGCCGGGA
JMFS031C09+           ACGAAACCGGCTTCTCCGGCTGGGGGCGGGGGACAATGAGGGAGGAGATATTCGCCGGGA
                      ____________________________________________________________
consensus             ACGAAACCGGCTTCTCCGGCTGGGGGCGGGGGACAATGAGGGAGGAGATATTCGCCGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           AGGAGGCGAACGCCTTGGGAGACGGCGGCGGCGGAGGCAGAGGGAACGACGGAAAGAACG
JMFS031C09+           AGGAGGCGAACGCCTTGGGAGACGGCGGCGGCGGAGGCAGAGGGAACGACGGAAAGAACG
                      ____________________________________________________________
consensus             AGGAGGCGAACGCCTTGGGAGACGGCGGCGGCGGAGGCAGAGGGAACGACGGAAAGAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           GAGCATTGCCGTCAGCGGTAGAAGGCACGGAAGGCGGCGCCGGCGGCGACGGCACTGGCG
JMFS031C09+           GAGCATTGCCGTCAGCGGTAGAAGGCACGGAAGGCGGCGCCGGCGGCGACGGCACTGGCG
                      ____________________________________________________________
consensus             GAGCATTGCCGTCAGCGGTAGAAGGCACGGAAGGCGGCGCCGGCGGCGACGGCACTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015F07+           GC                                                          
JMFS031C09+           GCTTGGAATCCAATGGAAGGAAGGGTTGGTGGAGAACACGGCGGCTGTGGGTGGCGCAGG
                      ____________________________________________________________
consensus             GCTTGGAATCCAATGGAAGGAAGGGTTGGTGGAGAACACGGCGGCTGTGGGTGGCGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031C09+           AAAAAGAGCAAGAAAAGAGGAAAAGCGAGAGAAAGATGGAGGTTAGTGGAGGCATTGCAG
                      ____________________________________________________________
consensus             AAAAAGAGCAAGAAAAGAGGAAAAGCGAGAGAAAGATGGAGGTTAGTGGAGGCATTGCAG