Contig 000401:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+                                       CGAATTGTTCCATTCGTTTGTAAGCTTCCATT
JMFS029D09+                                                                TTCCATT
                      ____________________________________________________________
consensus                                         CGAATTGTTCCATTCGTTTGTAAGCTTCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           GGACACAAAATCCTCNCGAGCCGTGTCAAATCCCTTAGTATTATCTACAAACAATGCTCC
JMFS029D09+           GGACACAANATCCTCACGAGCCGTGTCAAATCCTTTAGTATTATCTACAAACAATGCTCC
                      ____________________________________________________________
consensus             GGACACAAAATCCTCACGAGCCGTGTCAAATCCTTTAGTATTATCTACAAACAATGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           ATTCCCATTTTCTGNTGCAATCCCGCTTACACTATCCGCTTTTTGGCAGTTGTAGCACAT
JMFS029D09+           ATTCCCATTNTCTGCTGCAATCCCGCTTACACTATCCGCTTTTTGGCAGTTGTAGCACAT
                      ____________________________________________________________
consensus             ATTCCCATTTTCTGCTGCAATCCCGCTTACACTATCCGCTTTTTGGCAGTTGTAGCACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           CCGCCTTAGAGGGCCGGTACCAAATCCATGCAAATCTCTCCGACAACCCCCCATAAATGA
JMFS029D09+           CCGCCTTAGAGGGCCGGTACCAAATCCATGCAAATCTCTCCGACAACCCCCCATAAATGA
                      ____________________________________________________________
consensus             CCGCCTTAGAGGGCCGGTACCAAATCCATGCAAATCTCTCCGACAACCCCCCATAAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           CCGACTGTTTATGTTAAGGTATAAATGGTTCGAACATTTGAGCATTTTCATATATTTTAA
JMFS029D09+           CCGACTGTTTATGTTAAGGTATAAATGGTTCGAACATTTGAGCATTTTCATATATTTTAA
                      ____________________________________________________________
consensus             CCGACTGTTTATGTTAAGGTATAAATGGTTCGAACATTTGAGCATTTTCATATATTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           GCCTCTTTTATTTGTCAAGTTTAGCAAGGAACCAGAAGGATGTCCTTGGCCTGATGCCCT
JMFS029D09+           GCCTCTTTTATTTCTCAAGTTTAGCAAGGAACCAGAAGGATGTCCTTGGCCTGATGCCCT
                      ____________________________________________________________
consensus             GCCTCTTTTATTTGTCAAGTTTAGCAAGGAACCAGAAGGATGTCCTTGGCCTGATGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           AAAACATTGATCAGACCCGAATAGGCCAGGCACACCGCTGCCCAGAACCNGTAGAACTGC
JMFS029D09+           AAAACATTGATCAGACCCGAATAGGCCAGGCACACCGCTGCCCAGAACCCGTAGAACTGC
                      ____________________________________________________________
consensus             AAAACATTGATCAGACCCGAATAGGCCAGGCACACCGCTGCCCAGAACCCGTAGAACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           CTCTGAAGTATTCATTGGTCCTTTNTTCGACGAAAACAAACAATTTATATACTTCACAAT
JMFS029D09+           CTCTGAAGTATTCATTGGTCCTTTTTTCGACGAAAACAAACAATTTATATACTTCACAAT
                      ____________________________________________________________
consensus             CTCTGAAGTATTCATTGGTCCTTTTTTCGACGAAAACAAACAATTTATATACTTCACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           GAGGCTCTCACTTCCACTTCAATATCAATTGCCCACATGAAACAAAAGGGAATAATACNG
JMFS029D09+           GAGGCTCTCACTTCCACTTCAATATCAATTGCCCACATGAAACAAAAGGGAATAATACTG
                      ____________________________________________________________
consensus             GAGGCTCTCACTTCCACTTCAATATCAATTGCCCACATGAAACAAAAGGGAATAATACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043P01+           GAATCTGATAATGTGATGATTTAAAGATT                               
JMFS029D09+           GAATCTGATAATGTGATGATTTAAAGATTGAATTTCAATCGCGGCTGCAATGGAGATTTT
                      ____________________________________________________________
consensus             GAATCTGATAATGTGATGATTTAAAGATTGAATTTCAATCGCGGCTGCAATGGAGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS029D09+           ATAGTTGCGTGTGAGTGTAGGCCGCAACCTCAATGGCGGGCGTAAAATGGCAACAACCCA
                      ____________________________________________________________
consensus             ATAGTTGCGTGTGAGTGTAGGCCGCAACCTCAATGGCGGGCGTAAAATGGCAACAACCCA