Contig 000393:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D06Sequence565000393 (6)ref|XP_009790737.1|216PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]695005439 (3)ref|XP_009602688.1|280PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana tomentosiformis]
JMFF027M07Sequence531000393 (6)ref|XP_009790737.1|213PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]627005439 (3)gb|AEW08260.1|1e-47hypothetical protein 2_4562_01, partial [Pinus radiata] gb|AFG69277.1| hypotheti
JMFS021H07Sequence624000393 (6)ref|XP_009790737.1|212PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS028C02Sequence602000393 (6)ref|XP_009790737.1|199PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS076A09Sequence633000393 (6)ref|XP_009790737.1|233PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS164F11Sequence560000393 (6)ref|XP_009790737.1|261PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS164F11+ CCCATTTGGGTAGCATACCTCAGAGCAGGCAAGTTATC
                      ____________________________________________________________
consensus CCCATTTGGGTAGCATACCTCAGAGCAGGCAAGTTATC
 
. : . : . : . : . : . :
JMFS164F11+ CAAAATCATATTCACCTGATAAAGGTCACGGGTCCTTTGTTTCAAGAGCTTTACATGGTG
JMFF027M07+ TTTCAAGAGCTTTACATGGTG
JMFF002D06+ TTGTTTCAAGAGCTTTACATGGTG
JMFS076A09+ ATCATATTCACCTGATAAAGGTCACGGGTCCTNTGTTTCAAGAGCTTTACATGGTG
JMFS028C02+ GTG
JMFS021H07+ TGTTTCAAGAGCTTANCATGGTG
                      ____________________________________________________________
consensus CAAAATCATATTCACCTGATAAAGGTCACGGGTCCTTTGTTTCAAGAGCTTTACATGGTG
 
. : . : . : . : . : . :
JMFS164F11+ TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFF027M07+ TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFF002D06+ TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFS076A09+ TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFS028C02+ TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAATCG
JMFS021H07+ TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
                      ____________________________________________________________
consensus TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
 
. : . : . : . : . : . :
JMFS164F11+ GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFF027M07+ GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFF002D06+ GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFS076A09+ GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFS028C02+ GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFS021H07+ GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
                      ____________________________________________________________
consensus GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
 
. : . : . : . : . : . :
JMFS164F11+ TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFF027M07+ TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFF002D06+ TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFS076A09+ TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFS028C02+ TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFS021H07+ TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
                      ____________________________________________________________
consensus TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
 
. : . : . : . : . : . :
JMFS164F11+ CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFF027M07+ CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFF002D06+ CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFS076A09+ CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFS028C02+ CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFS021H07+ CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
                      ____________________________________________________________
consensus CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
 
. : . : . : . : . : . :
JMFS164F11+ CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFF027M07+ CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFF002D06+ CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFS076A09+ CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFS028C02+ CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFS021H07+ CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
                      ____________________________________________________________
consensus CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
 
. : . : . : . : . : . :
JMFS164F11+ GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFF027M07+ GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFF002D06+ GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFS076A09+ GAAGGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFS028C02+ GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFS021H07+ GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
                      ____________________________________________________________
consensus GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
 
. : . : . : . : . : . :
JMFS164F11+ ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFF027M07+ ACAATCTCTTGAACCCCTGCTGGATC
JMFF002D06+ ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFS076A09+ ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFS028C02+ ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFS021H07+ ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
                      ____________________________________________________________
consensus ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
 
. : . : . : . : . : . :
JMFS164F11+ AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGAT
JMFF002D06+ AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
JMFS076A09+ AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
JMFS028C02+ AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
JMFS021H07+ AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
                      ____________________________________________________________
consensus AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
 
. : . : . : . : . : . :
JMFF002D06+ ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCT
JMFS076A09+ ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
JMFS028C02+ ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
JMFS021H07+ ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
                      ____________________________________________________________
consensus ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
 
. : . : . : . : . : . :
JMFS076A09+ TCAGTTGAAGGGTCCAAGAATTTCACAGATACAGCGG
JMFS028C02+ TCAGTTGAAGGGTCCAAGAATTTCACAGATCCAGCGGGAGGCCGCCTGCGTT
JMFS021H07+ TCAGTTGAAGGGTCCAAGAATTTCACAGATACAGCGGGAGGCCGGCTGCGTTTCACGTGG
                      ____________________________________________________________
consensus TCAGTTGAAGGGTCCAAGAATTTCACAGATACAGCGGGAGGCCGGCTGCGTTTCACGTGG