Contig 000393:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D06Sequence565000393 (6)ref|XP_009790737.1|216PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]695005439 (3)ref|XP_009602688.1|280PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana tomentosiformis]
JMFF027M07Sequence531000393 (6)ref|XP_009790737.1|213PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]627005439 (3)gb|AEW08260.1|1e-47hypothetical protein 2_4562_01, partial [Pinus radiata] gb|AFG69277.1| hypotheti
JMFS021H07Sequence624000393 (6)ref|XP_009790737.1|212PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS028C02Sequence602000393 (6)ref|XP_009790737.1|199PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS076A09Sequence633000393 (6)ref|XP_009790737.1|233PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]
JMFS164F11Sequence560000393 (6)ref|XP_009790737.1|261PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS164F11+                                 CCCATTTGGGTAGCATACCTCAGAGCAGGCAAGTTATC
                      ____________________________________________________________
consensus                                   CCCATTTGGGTAGCATACCTCAGAGCAGGCAAGTTATC
 
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JMFS164F11+           CAAAATCATATTCACCTGATAAAGGTCACGGGTCCTTTGTTTCAAGAGCTTTACATGGTG
JMFF027M07+                                                  TTTCAAGAGCTTTACATGGTG
JMFF002D06+                                               TTGTTTCAAGAGCTTTACATGGTG
JMFS076A09+               ATCATATTCACCTGATAAAGGTCACGGGTCCTNTGTTTCAAGAGCTTTACATGGTG
JMFS028C02+                                                                    GTG
JMFS021H07+                                                TGTTTCAAGAGCTTANCATGGTG
                      ____________________________________________________________
consensus             CAAAATCATATTCACCTGATAAAGGTCACGGGTCCTTTGTTTCAAGAGCTTTACATGGTG
 
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JMFS164F11+           TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFF027M07+           TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFF002D06+           TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFS076A09+           TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
JMFS028C02+           TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAATCG
JMFS021H07+           TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
                      ____________________________________________________________
consensus             TTCATTTAGTGGACCAGTAGTGCAGAGGTACAGTGTTTCATTGACATTCATGCGGAAACG
 
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JMFS164F11+           GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFF027M07+           GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFF002D06+           GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFS076A09+           GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFS028C02+           GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
JMFS021H07+           GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
                      ____________________________________________________________
consensus             GTAGGGAGAGTTGTCAATTTGATCTCCCATCAGCAACTCTCCAACATTCTCAGCACTTTT
 
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JMFS164F11+           TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFF027M07+           TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFF002D06+           TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFS076A09+           TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFS028C02+           TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
JMFS021H07+           TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
                      ____________________________________________________________
consensus             TTTAATGCCACCTGGAGGTCTACAATAAGGAAGATCATAGTAGCTGAATGGAAGCTCAGT
 
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JMFS164F11+           CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFF027M07+           CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFF002D06+           CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFS076A09+           CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFS028C02+           CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
JMFS021H07+           CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
                      ____________________________________________________________
consensus             CTCAATTGAGGTCAACGAGTTCACTTTGACAATAATTTGGTCACTAGGCGAATACGTATG
 
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JMFS164F11+           CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFF027M07+           CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFF002D06+           CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFS076A09+           CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFS028C02+           CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
JMFS021H07+           CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
                      ____________________________________________________________
consensus             CATGTAGGTTCCCGGTAAATAAAACCCATGGCATGCATGTGAAATGAGGATGAAATATGA
 
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JMFS164F11+           GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFF027M07+           GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFF002D06+           GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFS076A09+           GAAGGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFS028C02+           GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
JMFS021H07+           GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
                      ____________________________________________________________
consensus             GAAAGCAGCCAAGTATCTCCTCCTCAATATTGATGATGATGCCATTGCTATGAGAAGGAG
 
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JMFS164F11+           ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFF027M07+           ACAATCTCTTGAACCCCTGCTGGATC                                  
JMFF002D06+           ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFS076A09+           ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFS028C02+           ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
JMFS021H07+           ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
                      ____________________________________________________________
consensus             ACAATCTCTTGAACCCCTGCTGGATCTAAGCAAGTAGTGGTGCAGAAACCATCAAATCGG
 
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JMFS164F11+           AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGAT                  
JMFF002D06+           AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
JMFS076A09+           AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
JMFS028C02+           AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
JMFS021H07+           AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
                      ____________________________________________________________
consensus             AAATGGATCTGGAAATGAAAGGATGGAATAGATCGGACGGATTAGGGCTTGATGATTCTG
 
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JMFF002D06+           ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCT      
JMFS076A09+           ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
JMFS028C02+           ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
JMFS021H07+           ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
                      ____________________________________________________________
consensus             ATGGCGGAGATGTGAGGGAGAGAAGAGAATAGAGAAGGGCGGTGGCGTGATTCTGAGATT
 
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JMFS076A09+           TCAGTTGAAGGGTCCAAGAATTTCACAGATACAGCGG                       
JMFS028C02+           TCAGTTGAAGGGTCCAAGAATTTCACAGATCCAGCGGGAGGCCGCCTGCGTT        
JMFS021H07+           TCAGTTGAAGGGTCCAAGAATTTCACAGATACAGCGGGAGGCCGGCTGCGTTTCACGTGG
                      ____________________________________________________________
consensus             TCAGTTGAAGGGTCCAAGAATTTCACAGATACAGCGGGAGGCCGGCTGCGTTTCACGTGG