Contig 000392:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS021E03Sequence557000392 (5)emb|CDP03695.1|2e-44unnamed protein product [Coffea canephora]
JMSF030C07Sequence650000392 (5)ref|XP_009784879.1|1e-61PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nicotiana sylvestris] 748000392 (5)emb|CDP03695.1|5e-67unnamed protein product [Coffea canephora]
JMSF031C07Sequence642000392 (5)ref|XP_009784879.1|4e-59PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Nicotiana sylvestris] 705000392 (5)ref|XP_011079992.1|4e-58PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Sesamum ind

Alignment

This contig is upended


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JMSF031C07-                                                          GGGGACTTTGCCC
JMSF030C07-                                                          GGGGACTTTGCCC
                      ____________________________________________________________
consensus                                                            GGGGACTTTGCCC
 
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JMSF031C07-           CTCAAAAAGACAAACATAATCAGTTCAAGCTACGGAAGCCACCAACCTTCACAGGTCGCT
JMSF030C07-           CTCAAAAAGACAAACATAATCAGTTCAAGCTACGGAAGCCACCAACCTTCACAGGTCGCT
                      ____________________________________________________________
consensus             CTCAAAAAGACAAACATAATCAGTTCAAGCTACGGAAGCCACCAACCTTCACAGGTCGCT
 
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JMSF031C07-           GATTCACGCCAGACAAACATAATCAGTTCAAGCTACAGACCTTCATCGATTTTTTGTCGA
JMSF030C07-           GATTCACGCCAGACAAACATAATCAGTTCAAGCTACAGACCTTCATCGATTTTTTGTCGA
                      ____________________________________________________________
consensus             GATTCACGCCAGACAAACATAATCAGTTCAAGCTACAGACCTTCATCGATTTTTTGTCGA
 
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JMSF031C07-           TTCACGCGAGAAGGCCCGTCGCCATCATTCTGCTATTGCTGGCTCACCGGCGTCGCCGAC
JMSF030C07-           TTCACGCGAGAAGGCCCGTCGCCATCATTCTGCTATTGCTGGCTCACCGGCGTCGCCGAC
                      ____________________________________________________________
consensus             TTCACGCGAGAAGGCCCGTCGCCATCATTCTGCTATTGCTGGCTCACCGGCGTCGCCGAC
 
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JMSF031C07-           AGTTTGCCTTTGCGACGCAGCTCCACTGCTCCAGGTTGAACTTCTCACTGATTAGAGTGG
JMSF030C07-           AGTTTGCCTTTGCGACGCAGCTCCACTGCTCCAGGTTGAACTTCTCACTGATTAGAGTGG
                      ____________________________________________________________
consensus             AGTTTGCCTTTGCGACGCAGCTCCACTGCTCCAGGTTGAACTTCTCACTGATTAGAGTGG
 
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JMSF031C07-           ATAAGTAATGTTCTATCTGAGCGAAATTGAGCACACTTTGAGATTACCTCCCCATCTCCT
JMSF030C07-           ATAAGTAATGTTCTATCTGAGCGAAATTGAGCACACTTTGAGATTACCTCCCCATCTCCT
                      ____________________________________________________________
consensus             ATAAGTAATGTTCTATCTGAGCGAAATTGAGCACACTTTGAGATTACCTCCCCATCTCCT
 
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JMSF031C07-           CAATCTTCCACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
JMSF030C07-           CAATCTTCCACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
rJMSF031C07+                                                             AGACAAGGT
rJMSF030C07+                  CACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
                      ____________________________________________________________
consensus             CAATCTTCCACTTAATGAAGCTATCAAGGGAGAGCTCGAGGGTCTCTTTGTAGACAAGGT
 
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JMSF031C07-           TATTGCACAATTAGGGCTTT-GTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
JMSF030C07-           TATTGCACAATTAGGGCTTT-GTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
rJMSF031C07+          TATTGCACAATTAGGGCTTTGGTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
rJMSF030C07+          TATTGCACAATTAGGGC-TTNGTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
                      ____________________________________________________________
consensus             TATTGCACAATTAGGGCTTTGGTATATCTGTATATGATATTCGCTCCATTGATGGTGGTT
 
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JMSF031C07-           TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
JMSF030C07-           TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
rJMSF031C07+          TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
rJMSF030C07+          TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
                      ____________________________________________________________
consensus             TTATTTTCGCAGGAGATGGTGCCTCCACATATACGGTGAAATTCAGATTGATAATCTTTC
 
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JMSF031C07-           GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
JMSF030C07-           GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
rJMSF031C07+          GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
rJMSF030C07+          GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
                      ____________________________________________________________
consensus             GCCCGTTTAGGGGAGAGGTCATAGCAGCAAGGCTGAAAGAATCCAATGCAAATGGTTTAC
 
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JMSF031C07-           GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
JMSF030C07-           GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
rJMSF031C07+          GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
rJMSF030C07+          GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
                      ____________________________________________________________
consensus             GCTTATCACTTGGATTTTTTGATGACATCTATGTACCAGCGGCTTTGATGCCGAATCCTT
 
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JMSF031C07-           CACATTCTGAGCCTGATCCTGAAAGCAGGA                              
JMSF030C07-           CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTC                      
rJMSF031C07+          CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTCAGGTGGATATGGGAGTATGAAG
rJMSF030C07+          CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTCAGGTGGATATGGGAGTATGAAG
                      ____________________________________________________________
consensus             CACATTCTGAGCCTGATCCTGAAAGCAGGAACCAGGTCAGGTGGATATGGGAGTATGAAG
 
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rJMSF031C07+          GAGAAAAATATCCTATTGATGGTACAGATGAGGTTGTGATACAGTCTAATTTGATGCCTT
rJMSF030C07+          GAGAAAAATATCCTATTGATGGTACAGATGAGGTTGTGATACAGTCTAATTTGATGCCTT
                      ____________________________________________________________
consensus             GAGAAAAATATCCTATTGATGGTACAGATGAGGTTGTGATACAGTCTAATTTGATGCCTT
 
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rJMSF031C07+          CTTTACCTCCCTCATTTATTATGGAATTTACATGAATAAAATTGATTCCTATTGCCACAG
rJMSF030C07+          CTTTACCTCCCTCATTTATTATGGAATTTACATGAATAAAATTGATTCCTATTGCCACAG
JMFS021E03+                                                                     AG
                      ____________________________________________________________
consensus             CTTTACCTCCCTCATTTATTATGGAATTTACATGAATAAAATTGATTCCTATTGCCACAG
 
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rJMSF031C07+          ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
rJMSF030C07+          ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
JMFS021E03+           ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
                      ____________________________________________________________
consensus             ATTAGATTCCGAGTTCTCGAAATTAGCTATCCATCGTTACCTTTAAATCAAGAGAAAGAT
 
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rJMSF031C07+          GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACNTGATGCGGATGGTTTGGGTCCC
rJMSF030C07+          GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACTTGATGCGGATGGTTTGGGTCCC
JMFS021E03+           GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACTTGATGCGGATGGTTTGGGTCCC
                      ____________________________________________________________
consensus             GCAAAGCCATTTGCTCCTATGGTGATCACGGGATCACTTGATGCGGATGGTTTGGGTCCC
 
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rJMSF031C07+          GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
rJMSF030C07+          GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
JMFS021E03+           GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
                      ____________________________________________________________
consensus             GTTTCATGGTGGGTGTGAAGTAATGGACATAGGTAAGGTTTTTCACTTTTTTGAGAGGAT
 
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rJMSF031C07+          TGATCTTCTTCCATTTNTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
rJMSF030C07+          TGATCTTCTTCCATTTTTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
JMFS021E03+           TGATCTTCTTCCATTTTTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
                      ____________________________________________________________
consensus             TGATCTTCTTCCATTTTTCATGCGATCTGAGAACTTCCCCTTTAAGTTTAAACCGGAGGT
 
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rJMSF031C07+          TGTCGTCATTTTGTAGGATAATAGCAAT                                
rJMSF030C07+          TGTCGTCATTTTGTAGGATAATAGCAAT                                
JMFS021E03+           TGTCGTCATTTTGTAGGATAATAGCAATTGTAAAGATTGTAGTTTAATGAATCAATTTGT
                      ____________________________________________________________
consensus             TGTCGTCATTTTGTAGGATAATAGCAATTGTAAAGATTGTAGTTTAATGAATCAATTTGT
 
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JMFS021E03+           GGTGAAAGTTCTGTTACTAGTTAATTTATGCAAAAAAAAAAAAAAAAAACTCGAGACTAG
                      ____________________________________________________________
consensus             GGTGAAAGTTCTGTTACTAGTTAATTTATGCAAAAAAAAAAAAAAAAAACTCGAGACTAG