Contig 000390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001E05Sequence570000390 (5)
JMFS018B07Sequence637000390 (5)emb|CDP18389.1|1e-05unnamed protein product [Coffea canephora]
JMFS051F12Sequence564000390 (5)emb|CDP18389.1|3e-05unnamed protein product [Coffea canephora]
JMFS118G07Sequence612000390 (5)
JMSF044O03Sequence739000390 (5)emb|CDP18389.1|2e-08unnamed protein product [Coffea canephora]707005437 (12)

Alignment

This contig is upended


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JMSF044O03+                                                TTACANCCGCCATGCAAGCAAGT
                      ____________________________________________________________
consensus                                                  TTACANCCGCCATGCAAGCAAGT
 
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JMSF044O03+           CTGGACCAACCATATGGCAATCCCGTTCGGTCATCGTAACGGATCCATTCGGGAGGTCCA
                      ____________________________________________________________
consensus             CTGGACCAACCATATGGCAATCCCGTTCGGTCATCGTAACGGATCCATTCGGGAGGTCCA
 
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JMSF044O03+           GCACAGCTGCCACGCCTTCCTCCGTGATGCGTAGGAACCTCCCGTTGCTCAACTTTATGG
JMFS118G07+                                                    CCGTTGCTCAACTTTATGG
JMFS051F12+                                          TAGGAACCTCCCGTTGCTCAACTTTATGG
JMFS018B07+                                  GTGATGCGTAGGAACCTCCCGTTGCTCAACTTTATGG
                      ____________________________________________________________
consensus             GCACAGCTGCCACGCCTTCCTCCGTGATGCGTAGGAACCTCCCGTTGCTCAACTTTATGG
 
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JMSF044O03+           CCATTTGTGCAGGGTTGAAGTTGCTTACCAACCAATGGCCTAGACGCAAGGGTAAAGCCT
JMFS118G07+           CCATTTGTGCAGGGTTGAAGTTGCTTACCAACCAATGGCCTAGACGCAAGGGTAAAGCCT
JMFS001E05+                                     ACCAACCAATGGCCTAGACGCAAGGGTAAAGCCT
JMFS051F12+           CCATTTGTGCAGGGTTGAAGTTGCTTACCAACCAATGGCCTAGACGCAAGGGTAAAGCCT
JMFS018B07+           CCATTTGTGCAGGGTTGAAGTTGCTTACCAACCAATGGCCTAGACGCAAGGGTAAAGCCT
                      ____________________________________________________________
consensus             CCATTTGTGCAGGGTTGAAGTTGCTTACCAACCAATGGCCTAGACGCAAGGGTAAAGCCT
 
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JMSF044O03+           CAACCCGGAGGCCTAGAAACCCCCCCATGCCAATAGAAATAACATCCTTCCTCTGCTTTG
JMFS118G07+           CAACCCGGAGGCCTAGAAACCCCCCCATGCCAATAGAAATAACATCCTTCCTCTGCTTTG
JMFS001E05+           CAACCCGGAGGCCTAGAAACCCCCCCATGCCAATAGAAATAACATCCTTCCTCTGCTTTG
JMFS051F12+           CAACCCGGAGGCCTAGAAACCCCCCCATGCCAATAGAAATAACATCCTTCCTCTGCTTTG
JMFS018B07+           CAACCCGGAGGCCTAGAAACCCCCCCATGCCAATAGAAATAACATCCTTCCTCTGCTTTG
                      ____________________________________________________________
consensus             CAACCCGGAGGCCTAGAAACCCCCCCATGCCAATAGAAATAACATCCTTCCTCTGCTTTG
 
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JMSF044O03+           TCGATAATCCAGTGAGCAGCCGTACAAGCTCACCCGGCCTCCCCCGCGTCTCAATCTGGG
JMFS118G07+           TCGATAATCCAGTGAGCAGCCGTACAAGCTCACCCGGCCTCCCCCGCGTCTCAATCTGGG
JMFS001E05+           TCGATAATCCAGTGAGCAGCCGTACAAGCTCACCCGGCCTCCCCCGCGTCTCAATCTGGG
JMFS051F12+           TCGATAATCCAGTGAGCAGCCGTACAAGCTCACCCGGCCTCCCCCGCGTCTCAATCTGGG
JMFS018B07+           TCGATAATCCAGTGAGCAGCCGTACAAGCTCACCCGGCCTCCCCCGCGTCTCAATCTGGG
                      ____________________________________________________________
consensus             TCGATAATCCAGTGAGCAGCCGTACAAGCTCACCCGGCCTCCCCCGCGTCTCAATCTGGG
 
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JMSF044O03+           AGAACGGGGATGCACCGGCTCCGTATCATCCAACTCCTCGGGGTCACTAGGGGGGGTGTG
JMFS118G07+           AGAACGGGGATGCACCGGCTCCGTATCATCCAACTCCTCGGGGTCACTAGGGGGGGTGTG
JMFS001E05+           AGAACGGGGATGCACCGGCTCCGTATCATCCAACTCCTCGGGGTCACTAGGGGGGGTGTG
JMFS051F12+           AGAACGGGGATGCACCGGCTCCGTATCATCCAACTCCTCGGGGTCACTAGGGGGGGTGTG
JMFS018B07+           AGAACGGGGATGCACCGGCTCCGTATCATCCAACTCCTCGGGGTCACTAGGGGGGGTGTG
                      ____________________________________________________________
consensus             AGAACGGGGATGCACCGGCTCCGTATCATCCAACTCCTCGGGGTCACTAGGGGGGGTGTG
 
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JMSF044O03+           GGCCTCGTCATCCACATCGGTCCCATCGTCACTTAAAACGATTGGTTGTCTAGCATCAGC
JMFS118G07+           GGCCTCGTCATCCACATCGGTCCCATCGTCACTTAAAACGATTGGTTGTCTAGCATCAGC
JMFS001E05+           GGCCTCGTCATCCACATCGGTCCCATCGTCACTTAAAACGATTGGTTGTCTAGCATCAGC
JMFS051F12+           GGCCTCGTCATCCACATCGGTCCCATCGTCACTTAAAACGATTGGTTGTCTAGCATCAGC
JMFS018B07+           GGCCTCGTCATCCACATCGGTCCCATCGTCACTTAAAACGATTGGTTGTCTAGCATCAGC
                      ____________________________________________________________
consensus             GGCCTCGTCATCCACATCGGTCCCATCGTCACTTAAAACGATTGGTTGTCTAGCATCAGC
 
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JMSF044O03+           CCCTGAGAAATCAAGCTGGAGCGCCGCCTGCCGCCGGGNTGCGACCCTAGCCGCTATGCC
JMFS118G07+           CCCTGAGAAATCAAGCTGGAGCGCCGCCTGCCGCCGGGCTGCGACCCTAGCCGCTATGCC
JMFS001E05+           CCCTGAGAAATCAAGCTGGAGCGCCGCCTGCCGCCGGGCTGCGACCCTAGCCGCTATGCC
JMFS051F12+           CCCTGAGAAATCAAGCTGGAGCGCCGCCTGCCGCCGGGCTGCGACCCTAGCCGCTATGCC
JMFS018B07+           CCCTGAGAAATCAAGCTGGAGCGCCGCCTGCCGCCGGGCTGCGACCCTAGCCGCTATGCC
                      ____________________________________________________________
consensus             CCCTGAGAAATCAAGCTGGAGCGCCGCCTGCCGCCGGGCTGCGACCCTAGCCGCTATGCC
 
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JMSF044O03+           GGACGCAGACAGAATCCCGCTGCCGGACCGGCGTTTAAACGTCCAGGAGCCCCTCGACGC
JMFS118G07+           GGACGCAGACAGAATCCCGCTGCCGGACCGGCGTTTAAACGTCCAGGAGCCCCTCGACGC
JMFS001E05+           GGACGCAGACAGAATCCCGCTGCCGGACCGGCGTTTAAACGTCCAGGAGCCCCTCGACGC
JMFS051F12+           GGACGCAGACAGAATCCCGCTGCCGGACCGGCGTTTAAACGTCCAGGAGCCCCTCGACGC
JMFS018B07+           GGACGCAGACAGAATCCCGCTGCCGGACCGGCGTTTAAACGTCCAGGAGCCCCTCGACGC
                      ____________________________________________________________
consensus             GGACGCAGACAGAATCCCGCTGCCGGACCGGCGTTTAAACGTCCAGGAGCCCCTCGACGC
 
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JMSF044O03+           TCGGTGCGAACCAGCCGATGGCGGTGTCACCGGCGACAGTAGCTGCCCCACCACCCTCCT
JMFS118G07+           TCGGTGCGAACCAGCCGATGGCGGTGTCACCGGCGACAGTAGCTGCCCCACCACCCTCCT
JMFS001E05+           TCGGTGCGAACCAGCCGATGGCGGTGTCACCGGCGACAGTAGCTGCCCCACCACCCTCCT
JMFS051F12+           TCGGTGCGAACCAGCCGATGGCGGTGTCACCGGCGACAGTAGCTGCCCCACCACCCTCCT
JMFS018B07+           TCGGTGCGAACCAGCCGATGGCGGTGTCACCGGCGACAGTAGCTGCCCCACCACCCTCCT
                      ____________________________________________________________
consensus             TCGGTGCGAACCAGCCGATGGCGGTGTCACCGGCGACAGTAGCTGCCCCACCACCCTCCT
 
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JMSF044O03+           CCTCGAACCCCGCGCGCCACTCAATCAAGTCATCACGAGCTTGTGAATGCACGGCGTTAC
JMFS118G07+           CCTCGAACCCCGCGCGCCACTCAATCAAGTCATCACGAGCTTGTGAATGCACGGCGTTAC
JMFS001E05+           CCTCGAACCCCGCGCGCCACTCAATCAAGTCATCACGAGCTTGTGAATGCACGGCGTTAC
JMFS051F12+           CCTCGAACCCCGCGCGCCACTCAATCAAGTCATCACGAGCTTGTGAATGCACGGC     
JMFS018B07+           CCTCGAACCCCGCGCGCCACTCAATCAAGTCATCACGAGCTTGTGAATGCACGGCGTTAC
                      ____________________________________________________________
consensus             CCTCGAACCCCGCGCGCCACTCAATCAAGTCATCACGAGCTTGTGAATGCACGGCGTTAC
 
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JMSF044O03+           ACCGGAGCGACCGTTCTGGTGAGTAGACTAGTCCGATTAGTCAGCTGGTGAAA       
JMFS118G07+           ACCGGAGCGACCGTTCTGGTGAGTAGACTAGTCCGATTAGTCAGCTGGTGAAA       
JMFS001E05+           ACCGGAGCGACCGTTCTGGTGAGTAGACTAGTCCGATTAGTCAGCTGGTGAAA       
JMFS018B07+           ACCGGAGCGACCGTTCTGGTGAGTAGACTAGTCCGATTAGTCAGCTGGTGAAACACCCTG
                      ____________________________________________________________
consensus             ACCGGAGCGACCGTTCTGGTGAGTAGACTAGTCCGATTAGTCAGCTGGTGAAACACCCTG