Contig 000378:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS019H06+                                                      AGTTATGACGGGACATT
                      ____________________________________________________________
consensus                                                        AGTTATGACGGGACATT
 
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JMFS019H06+           CCAGATCCTGTACTTCTGATATCATCCAAATCAGAGAGAGACAAGTTTCTAGATCTCTTG
                      ____________________________________________________________
consensus             CCAGATCCTGTACTTCTGATATCATCCAAATCAGAGAGAGACAAGTTTCTAGATCTCTTG
 
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JMFS019H06+           CAAGTTTTATATGTCTTTTTAAGGGTCTTTGTTGTATGACTGGCCTGATGTGAGCAATGT
                      ____________________________________________________________
consensus             CAAGTTTTATATGTCTTTTTAAGGGTCTTTGTTGTATGACTGGCCTGATGTGAGCAATGT
 
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JMFS019H06+           AGTTCAGGTTCAATTTCAGTATCATTTCTTGGATTCTTATGACTTGGTTTGCTGGACATA
                      ____________________________________________________________
consensus             AGTTCAGGTTCAATTTCAGTATCATTTCTTGGATTCTTATGACTTGGTTTGCTGGACATA
 
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JMFS019H06+           TCTTCTTCCATAAGTTCCTTGACCCTTGTTTTAACATCAAGGATTACTACCTCTCTTTCT
                      ____________________________________________________________
consensus             TCTTCTTCCATAAGTTCCTTGACCCTTGTTTTAACATCAAGGATTACTACCTCTCTTTCT
 
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JMFS098A02+                                   TCCTCATTGGAATCTGGTATAATGAGCTTTGGACTT
JMFS019H06+           TCATCATCCTCAACTATCGGACTCTCCTCATTGGAATCTGGTATAATGAGCTTTGGACTT
                      ____________________________________________________________
consensus             TCATCATCCTCAACTATCGGACTCTCCTCATTGGAATCTGGTATAATGAGCTTTGGACTT
 
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JMFS098A02+           GAAGCAGTACCAACTTGTCTGCTAGCTCGCCTTCTATCTGAAAGCAGCTTTCTGGTAGCT
JMFS019H06+           GAAGCAGTACCAACTTGTCTGCTAGCTCGCCTTCTATCTGAAAGCAGCTTTCTGGTAGCT
JMFS004E03+                                 TAGCTGGCCTTCTATCTGAAAGCAGCTTTGTGGTAGCT
                      ____________________________________________________________
consensus             GAAGCAGTACCAACTTGTCTGCTAGCTCGCCTTCTATCTGAAAGCAGCTTTCTGGTAGCT
 
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JMFS098A02+           AGACCACGGCGGAAGTCAAATATGCTAATGAAACCCCACATACAACCT            
JMFS019H06+           AGACCACGGCGGAAGTCAAATATGCTAATGAAACCCCACATACAACCTGCCTGATCCTTC
JMFS004E03+           AGACCGCGGCGGAAGTCAAATATGGTAATGAAACCCCACATACAACCTGCCTGATCCTTC
                      ____________________________________________________________
consensus             AGACCACGGCGGAAGTCAAATATGCTAATGAAACCCCACATACAACCTGCCTGATCCTTC
 
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JMFS019H06+           TCANTACGCAAAGAACGC                                          
JMFS004E03+           TCATAACGCAAAGAACGCCTTTGTGATCTCTTGGCCATTGTTGGAGATTGTTTTGATCGT
JMFS023G06+                                                          TTGTTTTGATCGT
                      ____________________________________________________________
consensus             TCATTACGCAAAGAACGCCTTTGTGATCTCTTGGCCATTGTTGGAGATTGTTTTGATCGT
 
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JMFS004E03+           GATGTGTTGTGTTTGTTTAGATTTTGTTTCTACTGGCAAACAAGGAATCAAAAAATTGCT
JMFS023G06+           GATGTGTTGTGTTTGTTTAGATTNTGTTTCT---GGCAAACAAGGAATCAAAAAATTGCT
                      ____________________________________________________________
consensus             GATGTGTTGTGTTTGTTTAGATTTTGTTTCTACTGGCAAACAAGGAATCAAAAAATTGCT
 
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JMFS004E03+           TTTCTCTTTCCAGCAACAAGGACCACAGTCCTTACAACATCGATGTGATTTTCCCTTCAA
JMFS023G06+           TTTCTCTTTCCAGCAACAAGGACCACAGTCCTTACAACATCGATGTGATTTTCCCTTCAA
                      ____________________________________________________________
consensus             TTTCTCTTTCCAGCAACAAGGACCACAGTCCTTACAACATCGATGTGATTTTCCCTTCAA
 
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JMFS004E03+           TGAAAATACTAAAACATCCAACTCGTGAAAGATTTAGTCCTCCTGACGATGTTCCAATTG
JMFS023G06+           TGAAAATACTAAAACATCCAACTCGTGAAAGATTTAGTCCTCCTGACGATGTTCCAATTG
JMFS139H02+                  ACTAAAACATCCAACTCGTGAAAGATTTAGTCCTCCTGACGATGTTCCAATTG
                      ____________________________________________________________
consensus             TGAAAATACTAAAACATCCAACTCGTGAAAGATTTAGTCCTCCTGACGATGTTCCAATTG
 
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JMFS004E03+           ATTCCCTTTCTTACAATTAAAGATGCCATCAATCTGATCTTCACGAATGACACTTCACTT
JMFS023G06+           ATTCCCTTTCTTACAATTAAAGATGCCATCAATCTGATCTTCACGAATGACACTTCACTT
JMFS139H02+           ATTCCCTTTCTTACAATTAAAGATGCCATCAATCTGATCTTCACGAATGACACTTCACTT
                      ____________________________________________________________
consensus             ATTCCCTTTCTTACAATTAAAGATGCCATCAATCTGATCTTCACGAATGACACTTCACTT
 
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JMFS004E03+           TGAAACCTCAATCTATCAAGGCCAAAAAGATCTCTACTTGATAAATG             
JMFS023G06+           TGAAACCTCAATCTATCAAGGCCAAAAAGATCTCTACTTGATAAATGCTGAAGCCTTGTA
JMFS139H02+           TGAAACCTCAATCTATCAAGGCCAAAAAGATCTCTACTTGATAAATGCTGAAGCCTTGTA
                      ____________________________________________________________
consensus             TGAAACCTCAATCTATCAAGGCCAAAAAGATCTCTACTTGATAAATGCTGAAGCCTTGTA
 
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JMFS023G06+           AGATCACTTCACAGATGTTTTTTCACTTTTACCTATCCAAAAACTGAAATACCCAATGCA
JMFS139H02+           AGATCACTTCACAGATGTTTTTTCACTTTTACCTATCCAAAAACTGAAATACCCAATGCA
                      ____________________________________________________________
consensus             AGATCACTTCACAGATGTTTTTTCACTTTTACCTATCCAAAAACTGAAATACCCAATGCA
 
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JMFS023G06+           ACTGTTCTTCCTATTCACACAAACCCACCAGAAAACTGAAGCGTCGACCTCAAAGACTCC
JMFS139H02+           ACTGTTCTTCCTATTCACACAAACCCACCAGAAAACTGAAGCGTCGACCTCAAAGACTCC
                      ____________________________________________________________
consensus             ACTGTTCTTCCTATTCACACAAACCCACCAGAAAACTGAAGCGTCGACCTCAAAGACTCC
 
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JMFS023G06+           ACAAAGCAAATACTCGGCATATGCGCAATCCCAATTCCCAGTTGAAATAAAATATACAAT
JMFS139H02+           ACAAAGCAAATACTCGGCATATGCGCAATCCCAATTCCCAGTTGAAATAAAATATACAAT
                      ____________________________________________________________
consensus             ACAAAGCAAATACTCGGCATATGCGCAATCCCAATTCCCAGTTGAAATAAAATATACAAT
 
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JMFS023G06+           TTGCGGATCAGAGAAGCACAAATTGTACAACTATAACATCATCATAAAAACAAAAACCAA
JMFS139H02+           TTGCGGATCAGAGAAGCACAAATTGTACAACTATAACATCATCATAAAAACAAAAACCAA
                      ____________________________________________________________
consensus             TTGCGGATCAGAGAAGCACAAATTGTACAACTATAACATCATCATAAAAACAAAAACCAA
 
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JMFS023G06+           TCTATATACAAAGAACTAATTTTTTTTTGTTGCGTTTGCTTTTTTCATTGGGGTTGAGGG
JMFS139H02+           TCTATATACAAAGAACTAATTTTTTTTTGTTGCGTTTGCTTTTTTCATTGGGGTTGAGGG
                      ____________________________________________________________
consensus             TCTATATACAAAGAACTAATTTTTTTTTGTTGCGTTTGCTTTTTTCATTGGGGTTGAGGG
 
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JMFS023G06+           TATCTA                                                      
JMFS139H02+           TATCTATTCCACCTCCACCGACCAAAAAGTCGAAAAGAGGGAAACCCAGATGGGAGAAAC
JMFS004G01+                                                  GGAAACCCAGATGGGAGAAAC
                      ____________________________________________________________
consensus             TATCTATTCCACCTCCACCGACCAAAAAGTCGAAAAGAGGGAAACCCAGATGGGAGAAAC
 
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JMFS139H02+           ACCGACCCACCTCTTTATACAAAGAAAATTAGGTGTGGGTCTGGCTTTGGCGCTGGGTGC
JMFS004G01+           ACCGACCCACCTCTTTATACAAAGAAAATTAGGTGTGGGTCTGGCTTTGGCGCTGGGTGC
                      ____________________________________________________________
consensus             ACCGACCCACCTCTTTATACAAAGAAAATTAGGTGTGGGTCTGGCTTTGGCGCTGGGTGC
 
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JMFS139H02+           AGCCATTAAAGACTTATGGAAGGTGGAACCAA                            
JMFS004G01+           AGCCATTAAAGACTTATGGAAGGTGGAACCAACAACTAGGGAGAGAGAGAAAGCAAAGGA
                      ____________________________________________________________
consensus             AGCCATTAAAGACTTATGGAAGGTGGAACCAACAACTAGGGAGAGAGAGAAAGCAAAGGA
 
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JMFS004G01+           AAGAGAAACTGTAAATGTCTATATAGAGAGAGAAAAACAGGGATGATGCATTGCAGGCTA
                      ____________________________________________________________
consensus             AAGAGAAACTGTAAATGTCTATATAGAGAGAGAAAAACAGGGATGATGCATTGCAGGCTA
 
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JMFS004G01+           GCTGCTGCGAGAGAAGTTCAAAAGGGGAAAAGTTTGATGACACCAGAGAGGGCTGGAAAT
                      ____________________________________________________________
consensus             GCTGCTGCGAGAGAAGTTCAAAAGGGGAAAAGTTTGATGACACCAGAGAGGGCTGGAAAT
 
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JMFS004G01+           GGTGGGACCATAAACAGAAATTCAGCTCTTTTTCTTTTATCCCACAGAAAAATAAAGCAA
                      ____________________________________________________________
consensus             GGTGGGACCATAAACAGAAATTCAGCTCTTTTTCTTTTATCCCACAGAAAAATAAAGCAA
 
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JMFS004G01+           AATTTCTGCTTTTTTTCCCTCGACGGTGTACAATGTTTTGCAGCAGTTGTTGATGTTGTT
                      ____________________________________________________________
consensus             AATTTCTGCTTTTTTTCCCTCGACGGTGTACAATGTTTTGCAGCAGTTGTTGATGTTGTT
 
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JMFS004G01+           CCACATCCAAGAATCACAAGGGTCGCCGCCCCACACCTTTGTCTTCTGTCTCCAATTCTG
                      ____________________________________________________________
consensus             CCACATCCAAGAATCACAAGGGTCGCCGCCCCACACCTTTGTCTTCTGTCTCCAATTCTG