Contig 000373:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023A10Sequence506017354ref|XP_009607764.1|6e-55PREDICTED: LOB domain-containing protein 41-like [Nicotiana tomentosiformis]567000373 (3)ref|XP_011099556.1|1e-15PREDICTED: LOB domain-containing protein 41 [Sesamum indicum]
JMFF037K08Sequence580000373 (3)ref|XP_011099556.1|1e-09PREDICTED: LOB domain-containing protein 41 [Sesamum indicum]
JMFN046P07Sequence572000373 (3)ref|XP_011099556.1|2e-20PREDICTED: LOB domain-containing protein 41 [Sesamum indicum]

Alignment

This contig is upended


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rJMFF023A10+             CTTCCTTTAAAAGCTTGTGACATTGGACNCGTGCNCTACAAGGAAGGAAATCGCGGC
rJMFF037K08+           TCCTTCCTTTAAAAGCTTGTGACATTGGACACGTGCACTACAAGGAAGGAAATCGNGGC
JMFN046P07-                                     TGGACACGTGCACTACAAGGAAGGAAATCGCGGC
                      ____________________________________________________________
consensus              TCCTTCCTTTAAAAGCTTGTGACATTGGACACGTGCACTACAAGGAAGGAAATCGCGGC
 
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rJMFF023A10+          AAGTCCGGCGATTTTCNCCGGGTCAGGAACCGGGGCCGGTTCAAGAGGTCGGGTGCCAAG
rJMFF037K08+          AAGTCCGGNGATTTTCNCCGGGTCAGGAACCGGGGCCGGTTCAAGAGGTNGGGTGCCAAG
JMFN046P07-           AAGTCCGGCGATCTTCACCGGGTCAGGAACCGGGGCCGGTTCAAGAGGTCGGGTGCCAAG
                      ____________________________________________________________
consensus             AAGTCCGGCGATTTTCACCGGGTCAGGAACCGGGGCCGGTTCAAGAGGTCGGGTGCCAAG
 
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rJMFF023A10+          ATCAAGGAAAGTAGTNTNTGTNCCGGGTCGAGCGACGAGGAGGTGAACCGATCAACGAGT
rJMFF037K08+          ATCAAGGAAAGTAGTNTNTGTNCCGGGTCGAGCGACGAGGAGGTGAACCGATCAACGAGT
JMFN046P07-           ATCAAGGAAAGTAGTATCTGTGCCGGGTCGAGCGACGAGGAGGTGAACCGATCAACGAGT
                      ____________________________________________________________
consensus             ATCAAGGAAAGTAGTATCTGTGCCGGGTCGAGCGACGAGGAGGTGAACCGATCAACGAGT
 
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rJMFF023A10+          CNCGAATCCTNGTTGTGCCATCAGTCGCCGGCGGCCAATGAAGAACCGGAAAGTCGCCAG
rJMFF037K08+          CNCGAATCCTNGTTGTGCCATCAGTCGCCGGCGGCCAATGAAGAACCGGAAAGTCGCCAG
JMFN046P07-           CACGAATCCTCGTTGTGCCATCAGTCGCCGGCGGCCAATGAAGAACCGGAAAGTCGCCAG
                      ____________________________________________________________
consensus             CACGAATCCTCGTTGTGCCATCAGTCGCCGGCGGCCAATGAAGAACCGGAAAGTCGCCAG
 
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rJMFF023A10+          ATCCAGAGACTGAACTCCGTTGAGATATNTCAGCCGGCGCCGGATGTNCGGCATGCCGAC
rJMFF037K08+          ATCCAGAGACTGAACTCCGTTGAGATATNTCAGCCGGCGCCGGATGTNCGGCATGCCGAC
JMFN046P07-           ATCCAGAGACTGAACTCCGTTGAGATATCTCAGCCGGCGCCGGATGTACGGCATGCCGAC
                      ____________________________________________________________
consensus             ATCCAGAGACTGAACTCCGTTGAGATATCTCAGCCGGCGCCGGATGTACGGCATGCCGAC
 
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rJMFF023A10+          GACGACGAAATTGAACTTGAGCTGACTNTTGGGTTCGCGCCGAGAGTGAAGTGACTNCCG
rJMFF037K08+          GACGACGAAATTGAACTTGAGCTGACTNTTGGGTTCGCGCCGAGAGTGAAGTGACTNCCG
JMFN046P07-           GACGACGAAATTGAACTTGAGCTGACTCTTGGGTTCGCGCCGAGAGTGAAGTGACTACCG
                      ____________________________________________________________
consensus             GACGACGAAATTGAACTTGAGCTGACTCTTGGGTTCGCGCCGAGAGTGAAGTGACTACCG
 
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rJMFF023A10+          GCTATGACGAAGANCCGAAGAGTGCATCGGTGATNGTGGCCTTTGATTCCCNCGGTGCAA
rJMFF037K08+          GCTATGACGAAGAGCCGAAGAGTGCATCGGTGATNGTGGCCTTTGATTCCCNCGGNGCAA
JMFN046P07-           GCTATGACGAAGAGCCGAAGAGTGCATCGGTGATCGTGGCCTTTGATTCCCACGGTGCAA
                      ____________________________________________________________
consensus             GCTATGACGAAGAGCCGAAGAGTGCATCGGTGATCGTGGCCTTTGATTCCCACGGTGCAA
 
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rJMFF023A10+          TCAGTTTTGACGGCTCAGATTTACAGTTTNTNTTGA-TTTTTTTTTTCCTTTTAATACTC
rJMFF037K08+          TCAGTTTTGACGGNTCAGATTTACAGTTTNTCTTGATTTTTTTTTTTCCTTTTAATACTC
JMFN046P07-           TCAGTTTTGACGGCTCAGATTTACAGTTTCTCTTGA--TTTTTTTTTCCTTTTAATACTC
                      ____________________________________________________________
consensus             TCAGTTTTGACGGCTCAGATTTACAGTTTCTCTTGA-TTTTTTTTTTCCTTTTAATACTC
 
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rJMFF023A10+          TGTACCAAATATGTATACCCTGTATACACGTAGGCATAGTAATTAGCGATAGAGTCATAG
rJMFF037K08+          TGTACCAAATATGTATACCCTGTATACACGTAGGCATAGTAATTAGCGATAGAGTCATAG
JMFN046P07-           TGTACCAAATATGTATACCCTGTATACACGTAGGCATAGTAATTAGCGATAGAGTCATAG
                      ____________________________________________________________
consensus             TGTACCAAATATGTATACCCTGTATACACGTAGGCATAGTAATTAGCGATAGAGTCATAG
 
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rJMFF023A10+          AGACACGGGAAGGATCTTCTTATGAATA                                
rJMFF037K08+          AGACACGGGAAGGATCTTCTTATGAATANACAGANATATAT                   
JMFN046P07-           AGACACGGGAAGGATCTTCTTATGAATATACAGATATATATGTTTTTTTTTAAATAATTC
                      ____________________________________________________________
consensus             AGACACGGGAAGGATCTTCTTATGAATATACAGATATATATGTTTTTTTTTAAATAATTC